Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00940 ATGTCAAACATGCTTAAGCGCAAATTAGAGGAGGAGCAACCTATCATGGATAATAATAATAATAATAATAATAATCCAGAGTTGTTGCTTACTCTGAGCCTCAACCTGGAAAGGGTTGATGAACCATCTTCCAATATGGAAAATCGCCCTAAGCAGCAACGATTATTTCCTTGCAAATTCTGTTACAAGAAGTTTGCGAGTTCTCAAGCTTTGGGAGGACATCAAAATGCTCACAAGCGCGAGAGGATGCTCTCAAGAATGAACAAAGTGTTTAACATGGGAGCCATTGACCTTGGTCCTCGTCACTTCTGTCCTTACTCAAACATGTCAAATCATCTTATTCCCTTTCGTGGGTCATTTCCTGTTTATCATCAAGGTGCACACATGCACCACATGGTTCATATGCCTTCTTCCACCTTGACCATGCCTTTTCCTCGTTTTGGATCTAACTTTGGAAACTGA 462 0.4113 MSNMLKRKLEEEQPIMDNNNNNNNNPELLLTLSLNLERVDEPSSNMENRPKQQRLFPCKFCYKKFASSQALGGHQNAHKRERMLSRMNKVFNMGAIDLGPRHFCPYSNMSNHLIPFRGSFPVYHQGAHMHHMVHMPSSTLTMPFPRFGSNFGN 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00940 153 Gene3D Classic Zinc Finger 40 93 - -
Arst10g00940 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Arst10g00940 153 Pfam C2H2-type zinc finger 56 80 - -
Arst10g00940 153 SUPERFAMILY beta-beta-alpha zinc fingers 53 83 IPR036236 -
Arst10g00940 153 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 16 142 IPR044246 GO:0009788
Arst10g00940 153 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00940 Arst-Chr10 8879936 8880397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00940 52 152 C2H2 Transcription Factor Family AT5G10970 38.614 2.97e-16 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst10g00940 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00940 - - aip:107620206 279.641