Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00880 ATGACCACCCGTCGTTGTTACCATTGCGGACTGAAGGTCCTCTGGTCGTTCTGGTCTTCTGGTTCTCTAGTCGTTGTCTGGTCCTCTAGTCGTCGTGGGAAGCATAGTTTGAAGGTTTCATCATCGTGGACATCTATTCTGTTGTCATCATCGTCGTCGAACATCTCTTCTGTTGCTTCCGCTGATTTAACGAGAACAATCTTTCTTCTTCATACTTCCATCTGTTCTCAAATCTCGCTATGGGCTCTTAATTTTTTCCAGGTGAAGTACTCCAGAGAACCCGAAAATCCCACTAAGTCTTGCAAGGCTAGAGGCTCTGATCTTAGGGTTCATTTCAAGAATACAAGGGAGACTGCCTTTGCAATCAGGAAGCTGCCCCTTGTTAAGGCAAAGAGGTACCTGGAGGATGTTCTGGCCCACAAACAGGCTATTCCATTCCGACGCTTCTGCGGTGGTGTTGGGAGGACTGCCCAGGCCAAGAACAGACATTCCAATGGACAAGGACGCTGGCCCGTGAAATCAGCTAAATTCATTCTTGATTTGCTCAAGAATGCTGAGAGCAATGCTGAGGTGAAAGGTTTGGATGTGGATGCTCTTTACATTTCTCATATCCAGGTTAATCAAGCACAGAAACAAAGGCGCCGCACCTACCGAGCTCACGGAAGAATCAATCCTTACATGTCATCACCATGCCACATAGAGTTGATTTTATCTGAGAAGGAAGAGCCTGTCAAGAAAGAGCCGGAGACCCAGCTGGCAACAAGCAAAAAGAAGTCTCAAGCTATTCGTAGTGGTGCTTCATCCTAA 807 0.4684 MTTRRCYHCGLKVLWSFWSSGSLVVVWSSSRRGKHSLKVSSSWTSILLSSSSSNISSVASADLTRTIFLLHTSICSQISLWALNFFQVKYSREPENPTKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKSQAIRSGASS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00880 268 ProSitePatterns Ribosomal protein L22 signature. 213 237 IPR018260 GO:0003735|GO:0005840|GO:0006412
Arst10g00880 268 Gene3D Ribosomal protein L22/L17 87 267 IPR036394 GO:0003735|GO:0005840|GO:0006412
Arst10g00880 268 Pfam Ribosomal protein L22p/L17e 103 238 IPR001063 GO:0003735|GO:0005840|GO:0006412
Arst10g00880 268 PANTHER 60S RIBOSOMAL PROTEIN L17 88 260 IPR005721 GO:0003735|GO:0006412|GO:0015934
Arst10g00880 268 NCBIfam 50S ribosomal protein L22 90 240 IPR005721 GO:0003735|GO:0006412|GO:0015934
Arst10g00880 268 Hamap 50S ribosomal protein L22 [rplV]. 86 240 IPR005721 GO:0003735|GO:0006412|GO:0015934
Arst10g00880 268 MobiDBLite consensus disorder prediction 254 268 - -
Arst10g00880 268 SUPERFAMILY Ribosomal protein L22 88 240 IPR036394 GO:0003735|GO:0005840|GO:0006412
Arst10g00880 268 FunFam 60S ribosomal protein L17 87 261 - -
Arst10g00880 268 CDD Ribosomal_L22 101 237 IPR001063 GO:0003735|GO:0005840|GO:0006412
Arst10g00880 268 MobiDBLite consensus disorder prediction 240 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00880 Arst-Chr10 7908649 7910962 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00880 88 268 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.740 5.84e-115 326