LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g00794	ATGAGCAAAGCAGGTGATACTGCCAAAGCAGAATCTGAAGGGGCCTCGGCTTCTCAAACTAGTACTTTGACGAGCTTGAAATCAACAATTTCCTCGCAGATACTAAGTTCCAACATGAGCAAAGCAGGTGCTACTCCCAAAACAGAATCTGAAGGGGCCTCGGCTTCTCAGATTAGAACTTTGACGAGCTTGCAATCAACAATTTCCTCACTTGAATTGATAAATAGTTTGAGGAGGAAGAGGGATTTGATGAGCCTCTTGTGTAGTTACCCGCTGGACATGAGAGTGATCTTTGATGATTTCATATCAAAGCCATATTGTGAGAGCAAGCTGCCGCTTAAACTAGAAGGACTTCTTCCAAAGGAGATAATAAGGGATGCTGAAAATGGTGATAGGTCCTGGTCCCGGTCCAGCTCTGGCTTCGGTGAGGCCGACTTGGACTTCATTCCAGAAGCTATTCTCAATTTGGCTTCTGATCTTGCTGTCCACCAACTCATCCAGACGCTGATTTCCTTTTCTAAAAATCAAAATCTAAACTATATAAAATACATCAGATTGTCAACCAGAAGCGACATTGAAAAAAGAGCAGTCATGGCGAAAGTAGCAGCAGCCTTGAATGACAAGCATAATGTGCTTGACATTCTGAGTTCATTTCGTGGAACTCTTAGTATTGAAGCCTCAAATTATCCAACTACAGGAGGAGAGAAGGAACTTCGAAAACATGTTTGTCAGCTACTTCAGCTTTCAATGATTGAAGACGATGAAGTTTTGTGCACCAGACACATTGAGGAAGAGATGTCAAGCAGCAGGTACCTAGTAATTCTTGCAGACAGGGATGGCGAGGAAATTGTCGATCTACAAAGAGTGGGATTTTGTAAGAGTCTACTGTCAGGAGTTTTGGTACTCATTACCACTGATTCACCAGCACCTCAACATGCTAAAGAAGAAGGATTGATGGAAGCCATAGTGGACTTGGAAATTCGGACTAAAGAACATTTGCTGCCATGGGTGGTCTTCTGTCACAATGCGGGGAAGGATTTTGTATATTCATCAAGTGCCATCCTGACAACTGCAGTGCGCATAGTTGAGGAGTGTCGAAGCCACCTTCACGCAATTCTCCTTGTGGCAAAGTGGTTGAAGAATCATCAAGATGTCAGAAAGTGGGAACTTGCTCTCCTCAAATTGCAATCTGGTAATCCTTCACAAGATATCCACAATTTTCATGGTTTAAACGAGATCATGGTTAACACATTCCTAAACTTAATATGGGATGGCATGAATAAGACACAACAGAATTGCCTACTGAGCTGTATAGTCATCCCTAAAATTAGAGATGGCATGGTTGATCATGAATTGATGAATCACTGGATGTCTTCTCTCTTTGTGGATGCTGGAGAAACAGAAAAGAACCTAAGACAACTTGTAGAAAATTCTGTCTTTCTTCAATTTGATGGTGTTGGAGGCGGGTATACTTGGTTACCAGAAGAAACCTATCAAATGTTAGAACGGCTATACAGCTCATACCCATTGTTCATAGAGAAATCAAACCTAGGGTTGACTGAACCACCCAACCCTGACAAATGGAATAATGCCTTACGAATTGAATTAGCAGGCAATAAAATCTCTGAGTTACCAAAGTCCCCAGCTTGTCTGGAACTCAAAGTTTTGATGCTGCAAAGCAATGCTGATTTGACAAAAATACCATCTTCATTTTTTGGTCAGATGCCACTGCTTTGCATCCTGAACTTATCCTACACTAGTGTAAGAGAACTGCCATCTTCATTGTTTTTTCTGGAGCAGCTTAGAGAACTGTATCTGAAAGGTTGTGAATGCTTCATGAAGTTACCACCTGAAATTGGAAATTTGGAGAAGCTTGAGAAGCTTGATCTTGATGAGACTCAGATCACACATCTGCCAAAAGAGGTCCAGAAGTTAACCAATATGCAAAGTTTGACCCTCTGCTTTTATGAATATCGTGTCAAGAAGAACATGCCATATTCTTGCTCAACAATTATTCCTTCTGGCGTGCTATCTAAACTCAAGAGGTTGGAACATTTGTGTATTGGTGTAAACCCTGATGATGAGCGGTGGGATGAGAATCTGCAAGTTATTCTACCAGAAATATTGGGATTAGAGTGTTTGCAAACTCTCAGTATGTATATCCCACAACCGGAACTTTTGAAGCTCATACCGGCCCACATTTTTGAGCTTGATTTCAGGTTCATTGTTGGTCGTCATATGCAGCGGATTATATCAAGCATACCACCTGCCACTGATGTGAAATTTAAACAAAGTGACTGCAGCTTAAAATTTGTAAAAGGTGAGGGTGTGCCAGATGAAATCAAAACGGTTCTTAGACACAGCAAGGCTCTTTTCTTGGATAGGCATTTCACCTTGAAGAGTCTTTCTGAATTTGAAATGAAAAATTTAGACCAACTAAGGGTGTGCATATTGGCAGAATGCAAAGAAATGCAGACATGTGGAGGTGGAGCAAAAGATGAAGATGACATGCTTCCGCATTTGCTATTCTTGAGTATATTCCACATGAAGAATCTGAGAAGCATATGGGAAGGCCCAACTTCCCCTCACTCCTCATTTGGTATGTTACAGTCTTTGTCTTTGCAAAGTTGTCCCAGGTTGGTGACTCTCTTCTCTTTGGACTTTCTGGGAAATCTTTCTTTGTTGAAGAAACTTATAGTGAAGGACTGCCCCAAATTAAGTACATTGATAAGTCATGAATCATCCAAGCGCAATGCACATGCTTTCCTCCCTAAATTGAGCAAGTTATTGCTTCTCCATCTTCCTGAATTGTCCAGCATTTCAAATGGGTTGCAAATTGGGCCTGGTTTAAAAGAAATAGCATTTTATGACTGTCCAAAGCTGCACAGTCTTTCAAGGAAGGAATTGGTAAGCAAAGAACTAACGGCAATAAAAGGAGAAACCAACTGGTGGAAGTCACTAGAAGGTCGAACGCCTAATTTTAATCTAATTTTTTCCCCAATTAATGAAGAGGCTGACTTGATGACTCAGTTAGGTATATGTGACGATGACGGTATTGATAATGGTCCAGGTGACTCAGTAGGTAAGCCGTCACAGCCTACAGGGATTGCAACTTGTGTATCAAATTCACCGACTAGGAGAGGCAAATATAGAAGGCGTAGAATCTCAAAAACTTGGGAGGTAGAGACAAGTTATCTCACTGAAGATGGATACGCATGGAGAAAATATGGTCAGAAATCGTTGTTCAACAATAAGTACCTGAGACATTATTACAGATGCACTCATAAGTATGATCAAGGATGCCTGGCCACAAAGCATGTTCAACGGATTGGCGAGGACCCTCCTTTATATAAAACAGTTTACTCTGGGCAACATACATGCCGCCGTAGACCGTAG	3396	0.4134	MSKAGDTAKAESEGASASQTSTLTSLKSTISSQILSSNMSKAGATPKTESEGASASQIRTLTSLQSTISSLELINSLRRKRDLMSLLCSYPLDMRVIFDDFISKPYCESKLPLKLEGLLPKEIIRDAENGDRSWSRSSSGFGEADLDFIPEAILNLASDLAVHQLIQTLISFSKNQNLNYIKYIRLSTRSDIEKRAVMAKVAAALNDKHNVLDILSSFRGTLSIEASNYPTTGGEKELRKHVCQLLQLSMIEDDEVLCTRHIEEEMSSSRYLVILADRDGEEIVDLQRVGFCKSLLSGVLVLITTDSPAPQHAKEEGLMEAIVDLEIRTKEHLLPWVVFCHNAGKDFVYSSSAILTTAVRIVEECRSHLHAILLVAKWLKNHQDVRKWELALLKLQSGNPSQDIHNFHGLNEIMVNTFLNLIWDGMNKTQQNCLLSCIVIPKIRDGMVDHELMNHWMSSLFVDAGETEKNLRQLVENSVFLQFDGVGGGYTWLPEETYQMLERLYSSYPLFIEKSNLGLTEPPNPDKWNNALRIELAGNKISELPKSPACLELKVLMLQSNADLTKIPSSFFGQMPLLCILNLSYTSVRELPSSLFFLEQLRELYLKGCECFMKLPPEIGNLEKLEKLDLDETQITHLPKEVQKLTNMQSLTLCFYEYRVKKNMPYSCSTIIPSGVLSKLKRLEHLCIGVNPDDERWDENLQVILPEILGLECLQTLSMYIPQPELLKLIPAHIFELDFRFIVGRHMQRIISSIPPATDVKFKQSDCSLKFVKGEGVPDEIKTVLRHSKALFLDRHFTLKSLSEFEMKNLDQLRVCILAECKEMQTCGGGAKDEDDMLPHLLFLSIFHMKNLRSIWEGPTSPHSSFGMLQSLSLQSCPRLVTLFSLDFLGNLSLLKKLIVKDCPKLSTLISHESSKRNAHAFLPKLSKLLLLHLPELSSISNGLQIGPGLKEIAFYDCPKLHSLSRKELVSKELTAIKGETNWWKSLEGRTPNFNLIFSPINEEADLMTQLGICDDDGIDNGPGDSVGKPSQPTGIATCVSNSPTRRGKYRRRRISKTWEVETSYLTEDGYAWRKYGQKSLFNNKYLRHYYRCTHKYDQGCLATKHVQRIGEDPPLYKTVYSGQHTCRRRP	1131

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g00794	1131	SMART	WRKY_cls	1067	1129	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Arst10g00794	1131	Gene3D	WRKY domain	1055	1130	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Arst10g00794	1131	MobiDBLite	consensus disorder prediction	37	56	-	-
	Arst10g00794	1131	MobiDBLite	consensus disorder prediction	1	22	-	-
	Arst10g00794	1131	Pfam	Leucine rich repeat	552	609	IPR001611	GO:0005515
	Arst10g00794	1131	SUPERFAMILY	WRKY DNA-binding domain	1063	1128	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Arst10g00794	1131	SUPERFAMILY	L domain-like	515	965	-	-
	Arst10g00794	1131	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	244	978	-	-
	Arst10g00794	1131	ProSiteProfiles	WRKY domain profile.	1062	1125	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Arst10g00794	1131	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	236	437	IPR027417	-
	Arst10g00794	1131	Gene3D	Ribonuclease Inhibitor	521	742	IPR032675	-
	Arst10g00794	1131	Gene3D	Ribonuclease Inhibitor	765	978	IPR032675	-
	Arst10g00794	1131	SMART	LRR_typ_2	575	598	IPR003591	-
	Arst10g00794	1131	SMART	LRR_typ_2	622	644	IPR003591	-
	Arst10g00794	1131	Pfam	WRKY DNA -binding domain	1068	1128	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g00794	Arst-Chr10	6588177	6624613	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g00794	997	1127	WRKY Transcription Factor Family	AT3G56400	40.000	1.16e-25	106

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Arst10g00794		WRKY	1.4e-21	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g00794	-		-	aip:107622712	2033.07