LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g00716	ATGGTGACTTCAACTTGCAAGGGTTCTTTTCTTGTTTGTGCAATTTTGGTGCTTGATTTGGTGCTTAAGGTCGCTGGCAATGCAGAAGGTGATGCCCTAAATGCATTGAAGAGCAACTTACAAGATCCTAACAATGTTCTTCAAAGCTGGGATGCCACCCTTGTCAATCCATGCACATGGTTTCATGTTACATGCAATAGTGATAATAGTGTGACCCGTGTTGATCTTGGAAATGCAGATCTATCGGGTACATTGGTTCCAAACCTTGGTAATCTACCAAATTTACAGTACCTGGAGCTTTATAGTAATAATATAACTGGAAAAATCCCAGACGAGCTCGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAATGTGCTAACTGGTCCAATACCAGCTACATTGGGCAAGCTTAGTAATCTACGCTTCCTGCGTCTCAACAATAACACCTTGTCAGGAGGCATTCCCATGTCTTTGACCGGGATCAATTCACTGCAAGTTCTTGATCTCTCAAACAACCAGCTAAAAGGAACTGTGCCAGTCAATGGTTCATTTTCATTGTTTACTCCGATCAGTTATCAAAATAATCCTGGCTTGATACAACCAAAGAATGCTCCTTCTGCGCCATTATCTCCTCCATCAGCACCTTCTTCAGGTAACAGTGCTACTGGAGCTATTGCTGGAGGAGTTGCTGCAGGTGCTGCCTTGTTGTTTGCAGCCCCTGCTATCGCACTTGCATATTGGCGAAGAAGGAAGCCTCAGGATCATTTCTTTGATGTCCCTGCTGAGGAGGATCCTGAAGTTCACCTAGGCCAGCTTAAAAGGTTTTCGCTGCGTGAGCTGCAAGTTGCAACAGATAACTTTAGTAACAAACATATTCTCGGTAGAGGTGGATTTGGGAAGGTATATAAAGGGCGTTTAGCTGATGGTAGTCTTGTAGCAGTAAAAAGGCTGAAAGAGGAGCGCACACAGGGTGGGGAGCTGCAATTTCAAACAGAAGTGGAAATGATCAGCATGGCCGTGCATCGCAATTTGCTTCGGCTCCGTGGTTTTTGCATGACACCTACTGAACGGTTGCTTGTGTATCCTTTCATGGTTAACGGAAGTGTGGCATCATGTTTACGAGAACGTAATGAATCTCAACCGCCACTTGACTGGCCAATACGCAAGCGTATTGCATTGGGAGCTGCTAGGGGGCTTGCTTATTTGCACGACCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCTGCAAATATATTATTGGATGAAGAATTTGAAGCAGTTGTTGGAGATTTTGGCTTAGCGAAACTTATGGATTACAAAGATACTCATGTTACCACTGCTGTACGTGGTACAATTGGGCATATAGCACCAGAGTACCTCTCAACTGGGAAGTCATCAGAGAAGACAGATGTTTTTGGATACGGTGTGATGCTTCTTGAACTAATAACCGGGCAGAGGGCTTTCGATCTGGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTTAAAGGGCTTCTTAAAGACAAGAAATTGGAAACACTGGTTGACGCGGATCTGCAGGGCAATTATAACGATGAGGAGGTAGAGCAGCTAATCCAAGTAGCGTTGCTATGCACACAAGGCTCCCCTATGGAAAGACCGAAGATGTCCGAGGTGGTTAGAATGCTAGAAGGCGACGGTTTGGCCGAAAAATGGGAGCAGTGGCAGAAAGAGGAGATGTTCCGTCAAGATTTTAACCACATCCATCACCCTAATGCAAATTGGATAGTAGACTCTACTTCTCACATCCAAGCAGATGAACTATCTGGTCCTAGATGA	1842	0.4446	MVTSTCKGSFLVCAILVLDLVLKVAGNAEGDALNALKSNLQDPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGNADLSGTLVPNLGNLPNLQYLELYSNNITGKIPDELGNLTNLVSLDLYLNVLTGPIPATLGKLSNLRFLRLNNNTLSGGIPMSLTGINSLQVLDLSNNQLKGTVPVNGSFSLFTPISYQNNPGLIQPKNAPSAPLSPPSAPSSGNSATGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERNESQPPLDWPIRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLQGNYNDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEEMFRQDFNHIHHPNANWIVDSTSHIQADELSGPR	613

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g00716	613	Pfam	Protein kinase domain	291	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g00716	613	Gene3D	Phosphorylase Kinase; domain 1	259	366	-	-
	Arst10g00716	613	FunFam	Somatic embryogenesis receptor-like kinase 1	367	584	-	-
	Arst10g00716	613	Gene3D	Transferase(Phosphotransferase) domain 1	367	584	-	-
	Arst10g00716	613	FunFam	Somatic embryogenesis receptor kinase 1	25	211	-	-
	Arst10g00716	613	Pfam	Leucine rich repeat N-terminal domain	27	66	IPR013210	-
	Arst10g00716	613	SUPERFAMILY	L domain-like	29	192	-	-
	Arst10g00716	613	SMART	serkin_6	290	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g00716	613	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	13	575	-	-
	Arst10g00716	613	FunFam	Somatic embryogenesis receptor kinase 1	259	366	-	-
	Arst10g00716	613	CDD	STK_BAK1_like	296	567	-	-
	Arst10g00716	613	ProSitePatterns	Protein kinases ATP-binding region signature.	296	318	IPR017441	GO:0005524
	Arst10g00716	613	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	413	425	IPR008271	GO:0004672\|GO:0006468
	Arst10g00716	613	MobiDBLite	consensus disorder prediction	200	223	-	-
	Arst10g00716	613	SUPERFAMILY	Protein kinase-like (PK-like)	269	565	IPR011009	-
	Arst10g00716	613	ProSiteProfiles	Protein kinase domain profile.	290	574	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g00716	613	Pfam	Leucine Rich Repeat	94	116	IPR001611	GO:0005515
	Arst10g00716	613	Gene3D	Ribonuclease Inhibitor	26	210	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g00716	Arst-Chr10	5924497	5930340	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g00716	15	613	Receptor kinase-like Gene Family	AT4G33430	78.582	0.0	979

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Arst10g00716		Pkinase	2.6e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g00716	K13416		-	gmx:100800522	1077.77