Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00672 ATGGCCACCGCCACTGCAGCTACCTCGCAGCTGCCGGCGCCGCCAGCGCAGCAGCAATTTCTCAACTTAGAATCCCTGGCTCGGATAGACACTACAACTCTCTCACAGTCGGAGCTCCATGCCCTGTCTCTCTCCTCCCTCTCCGCCTTCGATCTCCACTCCACCCGTCGCCACATCGTCACTCCCAAAATCGATCCGTCTCTCTTCAACGAGAGCGCCGGATCTCGCCGCCAGACATACTCCCGTCCTCGCCGCCCCGAGTCCTCTCCCACCGGCCGCCGACGCCGTGTTGCCGGCCTCCTCCCCGCCGCTAAGCTACCTTCTCTCCCTTCCGATGACCTTGGAAATGCCGAGAACCGGGTGATCATCGATTATCTGAAACAGTATATCAGGGAAGATCCCAAATTCGACCAAGTCGAGTTCGCTCCGCCTTCTTCCGCTTCCGCGCTGGTCGCCTACCACGGAGGTGGTGCTGGCGAAGGGAGAGGAGAGCTCGCTATGGTGAAATTCGGAGAGAGGAAGAGGAAGAGAGGGCGGAAGCCGAAGGTGAAGGTGAACTTGGAGGAATCCTACAGCGGGATGGAGATTGTGAACAAGAACGGAGTGGTGATCAATCTGATGGATCTAGCGAAGGCGGAGGATCCTTTTGCGGAGGAGCTGAGGAGGCGGACTGACGGACTGCAGGGAGAGGAGGAGCTGTTAGGGTTTCTGAGGGATTTAGAGGGACAGTGGGGAAGCAGGAGGAGGAAGAGGAGGATTGTGGACGCTGCCAATTTCGGTGACGCATTACCGCTTGGTTGGAAGCTTATTCTCGGGTTGAAGAGAAAGGATGGTCGCGCATGGATCTATTGTCGCAGATACATAAGCCCTAGTGGACAGCAATTTATGTCTTGTAGAGAAGTTGCTTCCTATTTGCAGTCTCTTATTGGCCATAGTGATGCACCGTTGCAAATCGGTCATAGGAGTGAGAATTTTCCGCAGGAACAAAGAGCAATCACTGAACACTCTGCAGGTGTTGCCCATGAGGATCAACGTGAATGGCAGATTGTTGTAGCTAACTCAGATGTACCTAGTTTTTCTGTTTCTAATGAACGTGGGATGGAATTGGCCTTGTTGGGTTTGGAAAATCTTGCAGACGTGGAAATACATGACCTATTTGAATGTCACAAATGCAATGTGACCTTTGACGAGAAGGATTCATACTTGCAGCACTTATTGTCATTTCACCAGAGAACAACAAGACGATATCGGCTTGGATCTTCTCTTGGAGATGGAGTTATAATTAAAGATGGAAAGTTTGAGTGCCAGTTCTGTCACAAGGTGTTTTCAGAAAGGCGTCGCTACAGTTCTCATGTGGGGATCCATGTTAGGAGTAATGTGAGGCAGGCTGAAGATTCGTCAGGTCTGGAAAATGTTCAACGGACAGACAAGTCTCCAGTGAGGGAGGACATGCTGCTTTCAAGACTCTCCAGGATGGATGCCCTTATTGAAATTGCTCAGAGCTCTATCATGGAGGATTGTGACATGGAGCCTGCTTCGAAAGTTGCTGCTTGTAGCTTGGATCAAGATATAAACTTTGAGTCAGAACAGCAAATGGAAGATAGCTTAAATGGAACAAATGTTGTTCAAGTTTTAAATCAGCAGGATAGTCCAGAGTTACACATGGATGTGGAAGAAGAGGAAACTGATGATGATAGCCAAGTTATTGATGCAAAGATGGTTACTTGTCTAGATCACACGGGTTTGTTATGTGTAAATGAGAAAAATGGTAATCCATCTGTTGAAGTGTTTGATAAGTCTGGGATTGATATGGGAGGAGCTTCTCAAGGCCCTTTGCTTAATTTATCTTGCAAGGACAAAATATCAGATTCTGGGGAGAATGAAAATTTTTGTTGCTCTAATATCAAAGAAAAGTTTAAGTTTAATGAAGATAACAATAATAAGAATGAATTGGGAATTGGTTCAGATGGTTGCAAAGATGTTCCTCTTAGGACCAATGTTCAAGAGTTGCTAATGCCAGCTTCTGAAGAAAATGTGATCGACTCTAGGGTTTCTAAATCTCCTATATCCCAAATGCAACCTTTGTATTCCTCTCCTGCTTTCAGCTCTTATAAGGTAGGAAAACAATCTTGTACTGAAGATCATGAGTATAAAAATGTGAAGCGGTTCCAGGAATTGGATGAAGTCAGTACTACTAAGCATGATGCTACAAGTGTTCAAGATTCCTTTTCACTGCCTGATGTGCAAACTGATACGATAAACAAAACAGTGATGGAAACAACATATCCCTCTTCTGTTCAGGTTGAATCACAAGAAGTTATGCAGCTTACAACTGTGTGTGTTTGGTGTGGAATAGAGTTCAACCATGATGCCCTTAATTCTGAAATACAACCTGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGGCAAAAATCTCTGGTCAAATTAATGTGTTGGACAGTTGA 2466 0.4627 MATATAATSQLPAPPAQQQFLNLESLARIDTTTLSQSELHALSLSSLSAFDLHSTRRHIVTPKIDPSLFNESAGSRRQTYSRPRRPESSPTGRRRRVAGLLPAAKLPSLPSDDLGNAENRVIIDYLKQYIREDPKFDQVEFAPPSSASALVAYHGGGAGEGRGELAMVKFGERKRKRGRKPKVKVNLEESYSGMEIVNKNGVVINLMDLAKAEDPFAEELRRRTDGLQGEEELLGFLRDLEGQWGSRRRKRRIVDAANFGDALPLGWKLILGLKRKDGRAWIYCRRYISPSGQQFMSCREVASYLQSLIGHSDAPLQIGHRSENFPQEQRAITEHSAGVAHEDQREWQIVVANSDVPSFSVSNERGMELALLGLENLADVEIHDLFECHKCNVTFDEKDSYLQHLLSFHQRTTRRYRLGSSLGDGVIIKDGKFECQFCHKVFSERRRYSSHVGIHVRSNVRQAEDSSGLENVQRTDKSPVREDMLLSRLSRMDALIEIAQSSIMEDCDMEPASKVAACSLDQDINFESEQQMEDSLNGTNVVQVLNQQDSPELHMDVEEEETDDDSQVIDAKMVTCLDHTGLLCVNEKNGNPSVEVFDKSGIDMGGASQGPLLNLSCKDKISDSGENENFCCSNIKEKFKFNEDNNNKNELGIGSDGCKDVPLRTNVQELLMPASEENVIDSRVSKSPISQMQPLYSSPAFSSYKVGKQSCTEDHEYKNVKRFQELDEVSTTKHDATSVQDSFSLPDVQTDTINKTVMETTYPSSVQVESQEVMQLTTVCVWCGIEFNHDALNSEIQPDSVGFMCPACKAKISGQINVLDS 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00672 821 ProSiteProfiles Zinc finger C2H2 type domain profile. 386 414 IPR013087 -
Arst10g00672 821 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 253 330 IPR001739 GO:0003677
Arst10g00672 821 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 1 649 IPR037472 -
Arst10g00672 821 ProSitePatterns Zinc finger C2H2 type domain signature. 388 409 IPR013087 -
Arst10g00672 821 Gene3D Classic Zinc Finger 375 463 - -
Arst10g00672 821 SMART c2h2final6 386 409 IPR013087 -
Arst10g00672 821 SMART c2h2final6 433 455 IPR013087 -
Arst10g00672 821 ProSitePatterns Zinc finger C2H2 type domain signature. 435 455 IPR013087 -
Arst10g00672 821 Gene3D - 241 346 - -
Arst10g00672 821 ProSiteProfiles Zinc finger C2H2 type domain profile. 433 460 IPR013087 -
Arst10g00672 821 MobiDBLite consensus disorder prediction 63 101 - -
Arst10g00672 821 SUPERFAMILY DNA-binding domain 261 317 IPR016177 GO:0003677
Arst10g00672 821 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00672 Arst-Chr10 5612773 5622697 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst10g00672 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00672 - - adu:107468625 1560.04