LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g00658	ATGGAGGTGCAGTTGCAGAGCGATCCATGGGAGTGGGAGAAGCCAATGGCCACTTATCTGCTTCGCTACCACTCCGACCAGCTCCGATCCATCGCTTCCTCTCCCGATCCCAATCTTCACTATCCTCTCTTCATTGACTTCGCAGAGTTGATGGAGGAACATCCTCACCTTGCGCGTCTCATATTCTCCCAACCCACCCCTTACTTGCAAGCCTTCGACAATGCTGCTCTCTTGTCTCACAGAATCGTGGTGAGAGATTTAGAGCAAGAGAAGAATGTTGTTGAGAAGAATTTCATTCATGTTCGAATCAACATCAGTGGTTCTCCCCTTGAATGCTCTGAGACGTTTCCGACCATAGGGCGTGTTCGAGTGCAGCATCGCGGAATTCTTCTCACTGTGAAAGGGACTGTAATCAGGTCTGGGGCAATCAAGATGCATGAAGGAGAGAGGAAGTATATGTGCAACAAATGCAAGAAGAGCTTCACAGTTTATCCTGAGGTTGAAGCTCGAAACTCCATATCATTACCTTCAATTTGCCCCATGCAGAAATTGAAGCCCTGTGGAGGCACAAACTTCCAGTATGTAGAAAATACTATAGTATGCCATGATTATCAGGAGATAAAAATCCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCCATTCCTCGTTCAATTCTTGTCATCTTGCATGATGATCTGGTTGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACTGGTCTCTTGACTGCAAAATGGTCTCCAGAGTTGAAAGATGTGCGCTGTGACCTTGATCCTGTATTAATAGCCAACAATGTAAGGAGGACCAATCAACTGAAGTCAGAAATGGACATTTCTGATGACTTAGTTACAAAATTCAAGCAGTTCTGGGAACATTTCAAAGATGCACCCTTAAAAGGGAGGAATGCTATTCTTCGAGGAATTTGCCCACAAGTATTTGGCCTGTTTACTGTCAAGCTGGCCGTTGCATTAACACTTATAGGAGGTGTTCAACATGTCGATGCTTCTGGAACAAGGGTAAGAGGGGAATCTCACTTACTCTTGGTTGGTGATCCCGGCACTGGAAAGTCTCAGTTTCTGAAATTTGCAGCGAAATTGAGCAATAGATCTGTTATTACCACTGGGCTGGGAAGCACAAGTGCTGGATTGACGGTTACTGCAGTGAAGGATGGAGGTGAGTGGATGTTGGAAGCTGGAGCCCTTGTTTTAGCAGATGGAGGATTGTGCTGCATAGATGAATTCGATAGCATGAGGGAACATGACAGGGCAACAATACATGAAGCCATGGAGCAGCAAACAATAAGTGTAGCTAAGGCTGGTCTTGTAACAACACTCAGCACTAGAACAACGGTATTTGGTGCCACAAATCCTAAAGGGCAATATGACCCCGATCAACCTCTGTCTGTCAATACAACACTCTCTGGTCCTTTACTTAGCAGGTTTGATATTGTCCTTGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCAGTAGTTTCATCCCATATTCTTTCTGAGGCAGAACCTGATAGAGCCAACAACGATGAAGATCTAGCAAAAGTCTGGCCTCTTTCTACACTCAAGAGGTACTTACACTATGTGAAAGAAACTTTCAAGCCAGTCCTTACAAGAGAGGCCGAAAGAGTCATATCTAGCTATTATCAACTTCAAAGGAAGTCTGCAACTCATAATGCAGCCAGGACCACCGTCCGGATGCTGGAAAGTTTAATACGCCTAGCTCAAGCTCATGCAAGGCTGATGTTCAGAAATGAAGTGACCCGATTAGATGCCATCACAGCAATTTTATGCGTAGAATCCTCAATGACTACCTCAGCTATAGTGGATTGCATTGGGAATGCCCTGCACTCCAATTTTACTGAAAACCCTGATCAGGAATGTATCCTTGCTAGATGCTAA	1938	0.4479	MEVQLQSDPWEWEKPMATYLLRYHSDQLRSIASSPDPNLHYPLFIDFAELMEEHPHLARLIFSQPTPYLQAFDNAALLSHRIVVRDLEQEKNVVEKNFIHVRINISGSPLECSETFPTIGRVRVQHRGILLTVKGTVIRSGAIKMHEGERKYMCNKCKKSFTVYPEVEARNSISLPSICPMQKLKPCGGTNFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILHDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNVRRTNQLKSEMDISDDLVTKFKQFWEHFKDAPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRANNDEDLAKVWPLSTLKRYLHYVKETFKPVLTREAERVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCVESSMTTSAIVDCIGNALHSNFTENPDQECILARC	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g00658	645	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	406	420	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Arst10g00658	645	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	484	492	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Arst10g00658	645	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	348	363	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Arst10g00658	645	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	434	447	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Arst10g00658	645	Pfam	MCM AAA-lid domain	533	614	IPR041562	-
	Arst10g00658	645	Gene3D	-	146	202	-	-
	Arst10g00658	645	ProSiteProfiles	MCM family domain profile.	307	510	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Arst10g00658	645	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	317	624	IPR027417	-
	Arst10g00658	645	SMART	AAA_5	349	498	IPR003593	GO:0016887
	Arst10g00658	645	SMART	mcm	115	616	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Arst10g00658	645	Pfam	MCM P-loop domain	309	512	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Arst10g00658	645	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	42	620	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Arst10g00658	645	Pfam	MCM OB domain	122	250	IPR033762	-
	Arst10g00658	645	Gene3D	-	122	250	IPR012340	-
	Arst10g00658	645	Gene3D	-	281	620	IPR027417	-
	Arst10g00658	645	CDD	MCM9	310	614	-	-
	Arst10g00658	645	FunFam	Probable DNA helicase MCM9	285	619	-	-
	Arst10g00658	645	SUPERFAMILY	Nucleic acid-binding proteins	40	257	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g00658	Arst-Chr10	5506852	5514609	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g00658	16	644	Core DNA Replication Machinery Family	AT2G14050	76.266	0.0	1017

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g00658	K10738		-	gmx:100776255	1113.21