Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00605 ATGGGGCGAGGAAAGATCGCGATTCGAAGGATCGACAATTCAACGAGCCGGCAAGTAACGTTTTCGAAAAGAAGAAATGGATTGCTGAAGAAAGCTAAGGAATTGTCCATTCTGTGTGATGCTGAAGTTGGATTGATTGTGTTCTCCAGCACTAGCAAGCTTTATGAATATGCAAGCACCAGCATGAAATCAATTATTGAACGCTACAACAAGCTTAAGGAAGAACATAATCAGCTGATGAATCCAGCTTCGGAAGTCAAGTTTTGGCAGAGAGAAGCTGCAAGCTTGAGGCAACAACTGCAGCACTTGCAAGAATGCCACAGGAAACTGATGGGCGAAGAGCTTTCTGGACTGGGCGTTCAAGAACTACAAAATCTTGAAAATCAACTGGAGATGAGTTTAAAGGGTGTTCGCATGAAAAAGGATCAAATTTTCACAGATGAGATTAAAGAACTACACCAAAAGGTTTATGAAGCAAGGAGTACAAATGGAGAAAATGCAGCATCCAATCCTCCATACACTATCGGAAATGGATATGACTTACTTGCACCTATCAGTCTCCAACTAAGCCAGCCAGAGACTCAATACACTGAACCACCTGCCAAAGCAATGAAACTGGGGTATTTCCTCACACCAATAATAACACAGTTCTTTTCTATACATTTACTTTATAATTTCGTTAAAATTAGAAACCAAATTTCTGCATCAGACTGCAGCTGCAATAACAAAAACTGTTCAAGAATCGTGGATGATTACCATTTCTGA 765 0.4039 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTSKLYEYASTSMKSIIERYNKLKEEHNQLMNPASEVKFWQREAASLRQQLQHLQECHRKLMGEELSGLGVQELQNLENQLEMSLKGVRMKKDQIFTDEIKELHQKVYEARSTNGENAASNPPYTIGNGYDLLAPISLQLSQPETQYTEPPAKAMKLGYFLTPIITQFFSIHLLYNFVKIRNQISASDCSCNNKNCSRIVDDYHF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00605 254 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Arst10g00605 254 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Arst10g00605 254 Pfam K-box region 84 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst10g00605 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst10g00605 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Arst10g00605 254 Gene3D - 13 107 IPR036879 GO:0003677|GO:0046983
Arst10g00605 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst10g00605 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst10g00605 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst10g00605 254 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Arst10g00605 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst10g00605 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst10g00605 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst10g00605 254 ProSiteProfiles K-box domain profile. 86 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst10g00605 254 Coils Coil 86 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00605 Arst-Chr10 5104354 5114038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00605 1 210 MADS-box Gene Family AT2G14210 58.824 9.76e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst10g00605 K-box 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00605 K09264 - gmx:100808145 339.732