Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00576 ATGGAGATTTCATCTGAATTGGGTATAATGGAGGATCCTAATAGCTTTCTCTGGCACTTAAGCTCTATTGATACTTGTGCTACTACCTTAGCTGTTTTTGGAGATAGCTTGCAAAAGAATAATCCATTATTCTGTAACTCAAACTTGATGAACTCCAAGATTTCCATGATGGAAACTACTACTTCACCTACTACTACTATAATTGAAAGACCAGCAAAACAGCTTAGAAGTAACAACACTAGTAATTGGAGTAGTCACATTAACAAGACACCAGAGTCACACTTTGTTGGTTCTTGCTCAAATAATCTTCTCTCCTTTGTTGATAACACAAATCATCATCATCATCAATTGGGGTTAGTAATGAAGCCTAAGGTTGAGATTATGAGTAGTAGTAGTCCTAATAACATAGATACTCAAGGAACAACCTTGTTGGGGAATAATAATAATCATCATCATAATCATGAAAACTATCTATTCAAAGAATCATCATGCCATGAGGCTAAGAACTTTGGGCAACGTCCTAAGCTTTCTTCTCATCAACCTCATGATCACATCATTGCTGAGAGGAAGCGCAGAGAGAAGCTCAGCCAGCGCTTCATTGCTTTATCTGCCCTTGTTCCTGGCCTCAAAAAGATGGATAAAGCTTCTGTTCTGGGAGATGCTATAAAGTACTTGAAACAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAAAAAGAAGAAGACCGTGGAATCAGTGGTAATGGTGAAGAAATCTCAGTTATGTAATGATGATGAAGACTCTTGCTCTTCAGAGACTGAGCCACTACCCGAAATTGAAGCAAGATTTTGCGAAAGAAATGTGCTAATAAGAGTTCACTGCGAGAAGAAAAAGGGTGTTATAGAAAATACAATCATTCAAATTGAGAAACTCCATCTCAAAGTCATCAATAGCAGCGTCTTAACATTTGGCAATTTTGCCCTTGATATAACCATCATTGCTCAGATGGATATGGAATTTTCCATGACAGTGAAGGAACTTGTTAAGAATCTACGTTCAGCGTTTTCAACTTTCATGTGA 1065 0.3775 MEISSELGIMEDPNSFLWHLSSIDTCATTLAVFGDSLQKNNPLFCNSNLMNSKISMMETTTSPTTTIIERPAKQLRSNNTSNWSSHINKTPESHFVGSCSNNLLSFVDNTNHHHHQLGLVMKPKVEIMSSSSPNNIDTQGTTLLGNNNNHHHNHENYLFKESSCHEAKNFGQRPKLSSHQPHDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQMQEKVSALEEEQKKKKTVESVVMVKKSQLCNDDEDSCSSETEPLPEIEARFCERNVLIRVHCEKKKGVIENTIIQIEKLHLKVINSSVLTFGNFALDITIIAQMDMEFSMTVKELVKNLRSAFSTFM 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00576 354 Gene3D - 178 252 IPR036638 GO:0046983
Arst10g00576 354 Pfam Helix-loop-helix DNA-binding domain 184 229 IPR011598 GO:0046983
Arst10g00576 354 CDD bHLH_AtNAI1_like 183 254 - -
Arst10g00576 354 SMART finulus 185 234 IPR011598 GO:0046983
Arst10g00576 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 241 IPR036638 GO:0046983
Arst10g00576 354 Coils Coil 218 245 - -
Arst10g00576 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Arst10g00576 354 PANTHER BHLH TRANSCRIPTION FACTOR 41 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00576 Arst-Chr10 4819971 4822871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00576 182 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 59.444 1.60e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst10g00576 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00576 - - aip:107624263 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g00576 10 4819971 4822871 Arst10g00576 10 4819971 4822871 ECH
Arst3g04269 3 118004918 118007717 Arst10g00576 10 4819971 4822871 PCT