Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00540 ATGGGTTCATCGGAAAACCCCAATTGGGTTCTGGACTACGCATATCTCGATGACATTCACTCTCTTTCTGACCCTTCCAACTTCTCTTGGCCCCCTCCTCCAACCTCCCTAAGTGCCGACCTTCATCAATCGCTTCCCAATTCTCATGGACCCGATCAATCTGCCTCAAGAAAACGCTTGAGGTCATCTGATTCAAAAGCGTGTAGAGAGAAAATGCGAAGGGATAGATTGAATGACAGATTTTTGGAACTTGGTTCCATTTTGGACCCCGGAAGGCCTCCCAAAACGGACAAGGCTGCTATACTGAGTGACGCGGTTCAACTGGTGTCGCAGCTGCGAGGGGAGGCTCAGAAGCTTAAAGAATCAACTGAGAATCTGCAGGAGAAAATCAATGAATTGAAGGCTGAGAAAAATGAGCTCCGCGACGAGAAGCAGAGGCTAAAAGCAGAGAAAGATAGCCTTGAGAAGCAGCTCAAAGCCTTGAATACACCATCTGGTTTCCTGCACCATCCTCCTACACTTCCAGCTGTTTTCCCTCATGCACCAGGGCAAGTTCTTGGAAGCAAGCTGGTGCCTTTCATGGGCTACCCAGGAGTTTCCATGTGGCAGTTTTTACCACCTGCTGCTGTCGACACATCGCAGGACCATGTACTCCGGCCCCCAGTTGCATAA 672 0.4955 MGSSENPNWVLDYAYLDDIHSLSDPSNFSWPPPPTSLSADLHQSLPNSHGPDQSASRKRLRSSDSKACREKMRRDRLNDRFLELGSILDPGRPPKTDKAAILSDAVQLVSQLRGEAQKLKESTENLQEKINELKAEKNELRDEKQRLKAEKDSLEKQLKALNTPSGFLHHPPTLPAVFPHAPGQVLGSKLVPFMGYPGVSMWQFLPPAAVDTSQDHVLRPPVA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00540 223 PANTHER BHLH TRANSCRIPTION FACTOR 5 223 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Arst10g00540 223 Pfam Helix-loop-helix DNA-binding domain 65 112 IPR011598 GO:0046983
Arst10g00540 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 137 IPR036638 GO:0046983
Arst10g00540 223 MobiDBLite consensus disorder prediction 24 73 - -
Arst10g00540 223 MobiDBLite consensus disorder prediction 33 53 - -
Arst10g00540 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Arst10g00540 223 Gene3D - 61 140 IPR036638 GO:0046983
Arst10g00540 223 CDD bHLH_AtILR3_like 66 141 - -
Arst10g00540 223 SMART finulus 67 118 IPR011598 GO:0046983
Arst10g00540 223 MobiDBLite consensus disorder prediction 54 73 - -
Arst10g00540 223 Coils Coil 102 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00540 Arst-Chr10 4365966 4367797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00540 1 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 57.692 3.15e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst10g00540 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00540 - - mnt:21402686 305.834