Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00513 ATGGCGGCTCAGCTACCAGAACACTTCAAGTGTCCGATTTCACTCGAAATAATGTCCGACCCAGTCATACTCTCCTCCGGCCACACATTCGACCGCTCCTCCATACAGCGCTGGCTCGATGCAGGCCACCGCACCTGCCCAATTACCAAACTGCCCCTCCCCGATCATGCCTCCCTCATCCCCAACCACGCCCTCCGCAGCCTCATTTCCAACTTTACCCCTCTCACTCCAACTCCAATTCCCAATCCCTCACCTCCCCACCCCCAACCTGTTTTCTGACTCGAAAAAATTCACTAAATCCAAATATCATATTTAAATCATCAAATTCCAATTGCCAAATCTTCCAACCATATTCGCTCCTATTTAACTTATTATTTAATTACTTTCGGTTAAACCGGGTATTACAATTCCCTTTGCGAGAACGCTCTCTCTTTGCTTCTCAATCTCAGTCTCGACGACCACAACAAGGTTGGACTCGTCGCCGAGGGAGTCGTTGCCCGCCTCGTCGCCGTCATCTCCGGAACGGCTGCCGGAAATCCATCCCCGGACTGCCGCGCGCTCGCAGCCACAACACTCACAAGCCTGGCCGTCGTGGAGGTCAACAAGGCCACAATCGGCGCGTACCCTCACGCGATCGAGTCACTCGTGGCACTCGTAAGGGATGGAAAGGGGAGAGAGAAGAAGGAAGCCGCGACGGCGCTCTATGCTCTCTGCTCCTTCCCGGACAACCGGCGGAGGGCGGTGGAGTGCGGCGCGGTGCCTGTTCTTCTCCGGAGCGTGGATTGCGGCTTGGAGAGGGCCGTTGAGGTTGTTGGAGTTCTTGCAAAGTGTAAGGAAGGGAGGGAACAGATGGAGAGGTTCCATGGATGCGTTCAGATTCTGAGTCGGGTTCTGAGGAATGGAAGCTCAAGAGGGGTTCAGTATGCTCTCTTGGCTCTTAACTCGTTGTGTTGTGGCAGTGAAGTTGCTTCTATGGAAGCCATCAGAGAAGGCCTTTTGGAAACATGTCTTGGCTTTCTGGAAGATGATAACGAGAAAGTGAGAAGGAATGCTTCTGCTTTGCTTCAGAATCTGCGTGGCAACAATAGGATCAGCTGA 1098 0.531 MAAQLPEHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDHASLIPNHALRSLISNFTPLTPTPIPNPSPPHPQPVFXLEKIHXIQISYLNHQIPIAKSSNHIRSYLTYYLITFGXTGYYNSLCENALSLLLNLSLDDHNKVGLVAEGVVARLVAVISGTAAGNPSPDCRALAATTLTSLAVVEVNKATIGAYPHAIESLVALVRDGKGREKKEAATALYALCSFPDNRRRAVECGAVPVLLRSVDCGLERAVEVVGVLAKCKEGREQMERFHGCVQILSRVLRNGSSRGVQYALLALNSLCCGSEVASMEAIREGLLETCLGFLEDDNEKVRRNASALLQNLRGNNRIS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00513 365 PANTHER U BOX DOMAIN-CONTAINING 5 356 - -
Arst10g00513 365 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Arst10g00513 365 SMART arm_5 152 197 IPR000225 GO:0005515
Arst10g00513 365 SMART arm_5 319 360 IPR000225 GO:0005515
Arst10g00513 365 SMART arm_5 201 239 IPR000225 GO:0005515
Arst10g00513 365 SMART arm_5 277 318 IPR000225 GO:0005515
Arst10g00513 365 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Arst10g00513 365 FunFam RING-type E3 ubiquitin transferase 4 75 - -
Arst10g00513 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Arst10g00513 365 CDD RING-Ubox_PUB 6 55 IPR045210 -
Arst10g00513 365 Gene3D - 126 364 IPR011989 -
Arst10g00513 365 Coils Coil 337 357 - -
Arst10g00513 365 SUPERFAMILY ARM repeat 138 359 IPR016024 -
Arst10g00513 365 SUPERFAMILY RING/U-box 3 73 - -
Arst10g00513 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00513 Arst-Chr10 4145986 4147767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00513 1 360 U-box Gene Family AT4G21350 52.941 2.51e-122 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00513 - - pcin:129286672 435.647