LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g00435	ATGGCTATTAACATCGTTGGTGCGATCACGGGCGTTATGAGCTGCCTCTGTACACAGAACTGTCTTCAAGAATCACTTGGTCATCATATTAGACACCTTAGAAGACCCAAAAGGAATTTGAACAAGCTCAAGTCATTGTTGGAGGAGCTAGATGCCCGGAAAGTTGACATGTGTGCCAAGCTAAATCAAATGTGGCTTCAAAAAGGGATGAATCCAAAGAAAGAAGTGGAATTGTGGCTGAAAAATGTTGATGAGATTGCAAATGAAGTAAATAAGATCATAAGGGAAGTTGAACAAGAAAGTGGAAGCACAAGTGTTCTCTCTCCATTTTATTATAGTTCAAGAATAAAGAGAGGAGAACTTATTGAGAAAAAAATGGAGGAGGTGAGAGAGCTTCTAGAGAAAGGTCGATTTGCAGATGATTCATTGGCTGAAACTTCTCCTCAAAAAGGGCAAACCCTTCCAACAACAAAGCTAATGGAACACGAAACAACAATGAAAAACTTGACCAAGATTTTGAACTTCATATTGGATGATAGAGTGAGAATTATTGGTGTTCATGGGATGGGCGGAGTGGGGAAAACAACTATTATGGCTGAAATTAACAATAGACTATTGAGGGAAAATAGACTATTTGACAGTGTTATTTGGGTTAGTTCCTCAAAGGACATGAAAACTGAGGAGTTACAAAAGGTTATTGCAGGTAAGTTTGATATAGACCTTTCAGGATTTCAGGATGAGACTTCAAGAGCTGCCACACTGTTTGAAGCTTTCCAAAGAAGGAAGAAGTTTGCCTTGATTCTGGATGATCTATGGGAGCCATTCTCTCTTGAAAGAGTTGGAATACCAATACCAACTGTGGAGAACGGTTGCAAACTGCTAATAACTACTCGAAGGGTAAGCGTTTGCCGAGGCATGGAAACAGATAGAGATGTCAAAGTAAAGGCTCTTACAGAAAATGAAGCATGGGATCTCTTCAGGGACAAAGTTGGGGATGAAGCATTGGCCTCTCCGGACATCAAACTGATTGCAAAAGATGTGGCAAAAGAATGCATGGGATTACCTCTTGGTATTGTTACCGTGGGGCGTGCCTTGAGAAATGCAACTGATATTTCAGAATGGCAGATTTCATTGATGGGGTTAAAAGCTTCAGCTCTCAACATAGAACAAATGGAAGAATCTGTTTTTTCTCGTTTGAAATTCAGCTTGACAAAATTGAAGGATGACACAAGTAGGTCCTGTTTTCTATATTGTGCTCTCTATCCTGAAGGTAATCATGTTGATGCAAATGAATTGATTGAGTATTGGATGTGGGAAGGTTTATTAGGTGCTGTGGATAGCATTTCAGCAAGCAAACAGAAGGGGAAAATCATATTGAATGAACTAAAATATGCATGCTTGTTGGAAAATGCTGCAGACAATGAGATGGAATGTGTCAAAATGCATGACTTAATACGAGATATGGCCTTGACAATCATGAAAACAGATCCTCGATGGCGCTGCATTGTCAAAGCTGGCAACAAATTGAAGAAACCTCCCCAAATTGATGAATGGACAGAAGATGCTCTAAGGGTGTCATTGATGAAAAATGATCTGAATAATATCTTTCTTGGCAATCCTCCATCATGTCCAGCTGTTACTTCCCTGTTATTGCAATACAACTCTTTCTCTCAAAATATACCTTATGACTTCTTTGATTTCATGCAAAGCCTAAAGGTTCTTGATCTCTCTTACACTGGGATCCATGTGCTGCCGGGTTCGGTTTCTAACTTAGAGAATCTATGTGCCTTATTATTGAGCAATTGCTGGAATTTGAAATTGATCCCTTCTGTGGCAAAACTCACTAAGTTGATGGTTCTCGACCTTTCGGGTTGCCGAAACATAAAGCAACTTCCCCATGGGACAGAACAGCTATGCAACCTGAGAAGGCTAAATATTTCCAATACCATGATTAACATCTTGCCATCTGGTTTTCTCTCAGCATTAACCCTTCTAGAGGAGTTATTAGCATCTAATGCTCTCGTCTTTCAAAAAACATTGCCACTGAGCGTTTCTGAAATCAGCATTGGTGAAATCATATCCTCCTCAAGATTATCATCTCTTGAAGTGGATTTCTGGCACTGTGATCTCTATAATCTGTATGCTTGCTCTGGTCACTGTGCTCAGCTAGAGAAGTTCAAGTTCAATGTTGGACCAGGAGAAATCCAAGAATTTTCGGAGAAATGGAGTGTGGCATTTCTCAGCATATCCATTGCCAAAGAGGAAATTTCAATCCCAGCAAATACTATCGAGTTGAAGTTTATTGACTGCTATGATATCACAGAGTTAACTACTTGCCTTTTGCATGTAGAGAAGCTCAAGAAATGCACAGTAGTTTGCTGTTACAGTGTAGAAAGAATTGTTGACACTGAGCAGATTGATTTATCTATGCTGGAGACTTTGGTGCTGAGATATTTGATCAATTTGCAGATGATATGTAGGGAAGTGATGACTTCATCTGCATTTATGAGATTAAAGATCATAAATGTAGAATTTTGTCCAAATTTGAAGAGCCTATTCTCAGGGAACCTTTTGCTTCAACTGTCAAATCTTGAAGAAATTAGAGTCGGCCACTGCAACAAGATGGAGGATTTGATGAGATGGGAAGGAGGGGGAAGAAACAGTAATGACATTCATGCTGCCAAAATTCACTTGCCTAGATTAAGGAAATTGAGGTTGGAGTTCATGCCAAATTTAAAAGGAATATATGATGGATTCATGAGTTATGGCTCTCCATGCTCTTTTGAAGTAGTTTCTTGTGATGCACTGAAGAGATTACCCTTTGATCTTGATGAATTAGTAGGCCTTAACCAGCAACTATTGTCACCGCATGCTTTGGAAATCAAAGGAGCAAAGTGTTGGTGGGATTCACTTGAGTGGGATGAACCTGATGCCAAGCAAATAATGCAGACATATTTCATAGAGATGCCAAGGGTGTCAGATAATGTTGGTAGCAGCAGCCAAGTAGGAGCAATAGTTCCTAATAGATAG	3030	0.3964	MAINIVGAITGVMSCLCTQNCLQESLGHHIRHLRRPKRNLNKLKSLLEELDARKVDMCAKLNQMWLQKGMNPKKEVELWLKNVDEIANEVNKIIREVEQESGSTSVLSPFYYSSRIKRGELIEKKMEEVRELLEKGRFADDSLAETSPQKGQTLPTTKLMEHETTMKNLTKILNFILDDRVRIIGVHGMGGVGKTTIMAEINNRLLRENRLFDSVIWVSSSKDMKTEELQKVIAGKFDIDLSGFQDETSRAATLFEAFQRRKKFALILDDLWEPFSLERVGIPIPTVENGCKLLITTRRVSVCRGMETDRDVKVKALTENEAWDLFRDKVGDEALASPDIKLIAKDVAKECMGLPLGIVTVGRALRNATDISEWQISLMGLKASALNIEQMEESVFSRLKFSLTKLKDDTSRSCFLYCALYPEGNHVDANELIEYWMWEGLLGAVDSISASKQKGKIILNELKYACLLENAADNEMECVKMHDLIRDMALTIMKTDPRWRCIVKAGNKLKKPPQIDEWTEDALRVSLMKNDLNNIFLGNPPSCPAVTSLLLQYNSFSQNIPYDFFDFMQSLKVLDLSYTGIHVLPGSVSNLENLCALLLSNCWNLKLIPSVAKLTKLMVLDLSGCRNIKQLPHGTEQLCNLRRLNISNTMINILPSGFLSALTLLEELLASNALVFQKTLPLSVSEISIGEIISSSRLSSLEVDFWHCDLYNLYACSGHCAQLEKFKFNVGPGEIQEFSEKWSVAFLSISIAKEEISIPANTIELKFIDCYDITELTTCLLHVEKLKKCTVVCCYSVERIVDTEQIDLSMLETLVLRYLINLQMICREVMTSSAFMRLKIINVEFCPNLKSLFSGNLLLQLSNLEEIRVGHCNKMEDLMRWEGGGRNSNDIHAAKIHLPRLRKLRLEFMPNLKGIYDGFMSYGSPCSFEVVSCDALKRLPFDLDELVGLNQQLLSPHALEIKGAKCWWDSLEWDEPDAKQIMQTYFIEMPRVSDNVGSSSQVGAIVPNR	1009

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g00435	1009	Gene3D	Ribonuclease Inhibitor	498	750	IPR032675	-
	Arst10g00435	1009	Coils	Coil	80	100	-	-
	Arst10g00435	1009	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	157	418	IPR027417	-
	Arst10g00435	1009	PRINTS	Disease resistance protein signature	612	628	-	-
	Arst10g00435	1009	PRINTS	Disease resistance protein signature	258	272	-	-
	Arst10g00435	1009	PRINTS	Disease resistance protein signature	183	198	-	-
	Arst10g00435	1009	PRINTS	Disease resistance protein signature	351	365	-	-
	Arst10g00435	1009	SUPERFAMILY	L domain-like	476	942	-	-
	Arst10g00435	1009	Coils	Coil	40	60	-	-
	Arst10g00435	1009	Gene3D	-	316	399	IPR042197	-
	Arst10g00435	1009	Pfam	Leucine rich repeat	545	602	IPR001611	GO:0005515
	Arst10g00435	1009	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	31	940	-	-
	Arst10g00435	1009	Gene3D	Ribonuclease Inhibitor	838	960	IPR032675	-
	Arst10g00435	1009	FunFam	Probable disease resistance protein At1g61300	145	311	-	-
	Arst10g00435	1009	Gene3D	-	142	313	IPR027417	-
	Arst10g00435	1009	Pfam	NB-ARC domain	169	403	IPR002182	GO:0043531
	Arst10g00435	1009	FunFam	Probable disease resistance protein At1g63360	403	491	-	-
	Arst10g00435	1009	Gene3D	-	400	491	IPR036388	-
	Arst10g00435	1009	FunFam	Probable disease resistance protein At5g66910	316	402	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g00435	Arst-Chr10	3499455	3503032	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g00435	181	655	WRKY Transcription Factor Family	AT5G45050	22.857	6.43e-16	81.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g00435	K13459		-	qsa:O6P43_012576	1047.73