Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00394 ATGGAAGATCAGTTTTTCTCTGAGGGAGAGGGAATTGGGTATTGGACACCTCCTGGCGCTCAATTCGATGGACCAAGCATGATAGACAACGGAATAAAAAATCTTGTATCAGAGGAGATGCTTGACAACCTCCCTGATCTCATGAACTTCGATAACCTTGCTGGTTGGGGTAATATTCCATCTGTGACTGATCATAATTTAGATAATGAAATTTCATCACTTGCCTCTATGCAGTATTCTCCACCTGATGCATTCAGTTTAGTGGAACAGGACAATGATCCATACTTTATGACAAAAGATTGTGGAAATTATAATGCTACTGAAACCTCCTTGGGTTTCGATGAGAAGGCTGTGTTACAGCAATTGGAGACCCAACTTGGGTTGTCAGAAGATGCAAATGATATAAATAACATAAATGGATCACTTCAAGAATTGAGTGCTGCTGACATGGGAAATTGCTTGGTGCCTAGACCATTTGCTTGGTCGCTTGATGAGAGAATGCTGAGGGCTATGGACTTGTTTAAGGAATCAGTTGGTGATGGAATATTGACACAAGTTTGGGCACCACATACATGCACATCTATTTATAGTGGGAAATCTTTTGATTTGTTTTTGCAGCTTGTTAATTTAAGGACTACTACGCCTCCAAGACTTATGTCCCAGTGTCTATCAAATAACAAAAGAGCAGCTTTAACAGAGATAATTGATGTGTTGCGAGCTTTGTGTCATGCATATAGTTTGCCACTGGCATTGACATGGATCCCCTGTTGTTATACTGAGGGAGTAGGAGATGAAGCTTCAAGAATACGGATTAAAGATGGCGGTAGAATTCCTGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTTGCTATATAAATGATATTGTGGTAGGAGGATTTGTTCATGCATGTGTTGAACATTATCTCGAGGAAGGGCAAGGTGTAGCTGGGAAAGCTCTTCAATCAAATCGACCATTCTTCTATTCCGATGTGAAGGCCTATAATATTAGTGCATATCCCCTTGTTCACCATGCGCGAAAATATAAGTTGAATGCTGCCGTTGCAGTCAGGCTAAGGAGTATTCATACCAATGATGATGATTACATAATAGAATTCTTTCTACCTGTCAATATGAATGGAAGTGAAGAACAGCAACTTTTATTAAACAATCTATCAGATACTATGCAGAGAATGTGTCAGAGTTTGAGGACAGTTTCGGATGCTGAATTATACGGGATAGAAGGTTCGCAAGTGCAGTTTTCAAAGGAAGAAGGCTCTCATATGGCACCGGATGGTGACCATGATTCGGTCATGCCTATGTCATTGACAAACAATGAAACTGAAGCTGCTCATAACCAGGCAATGGATGGATCAAGAAAGCAGATTGAGAAAAAGAAAAGTCCAGCGGAGAAGAATATTAGCTTGAGTGTTCTCCAGCAATATTTCTCCGGTAGTCTTAAAGATGCGGCTAAAAGCCTTGGTGTTTGCCCAACAACCCTGAAAAAGATATGCAGGCAACACGGAATTTCAAGATGGCCATCGCGCAAGATCAATAAAGTTAATCGTTCGTTAAAAAAAATACAAACCGTGCTTGACTCAGTCAAGGGTGTGGAAGGAGGACTGAAGTTTGATCCTTACAAGGGGGGATTTATGTCGGGAGGATCAAGCAACCAAGAAATTAATGCACATAAAAGTTCTCTCTTCCGGAAGAAATGTTCTGTAAAATATCCTGATCCTGCAGCTGGTAGCAAAGGTGAGAATTTAGCTTCTGCATTCAGACATGTTTATATGTAATTCCAAGGGTGAGTTGTGAAGCTTTTTTCTGTTGATGTAGATTCAAAGCCAATAGCCATGGATGATGGTGGATTACGGCAGGAACCCTTTCCGGTTTCTATTTTGGAAAGTTCTTGGTGTGATATAGCATATCACAGTCCAAACACCCTGGTTGCCGATGAGATGGCTGACAAGCTCGGCGAGCATCACAATCCCACTACTTCAAGCATGTCAGACTCGTCGAATGGCTTTGGCTCAATTTTGCGTGGCTCTCGGAAATTTGAGAATCGGAAACATTTGAAAGCCAAATCACCTTGTGTTGATAATGGATCAAAACTTGTTGTCAAAGCTGCCTACGGAGAAGATAGGATCCGTTTCAAGTTTGATCCTGCAGCTGGCTGTCTCCAGCTCTATGAAGAAGTTGCAACAAGATTCAAATTACAAATCGGATCTTTCCAGCTCAAGTATCTCGACGATGACGAGGAATGGGTGAGGATGGTAAATGACTCAGATTTGAAAGAATGCATGGAAATATTGGATGATCATGGCACCCGTGCTGTGAAATTTCTTGTTCTCGACATCCCTAGTGGTTTGAGCAGCCGTGGCAGTAACACTTGA 2394 0.414 MEDQFFSEGEGIGYWTPPGAQFDGPSMIDNGIKNLVSEEMLDNLPDLMNFDNLAGWGNIPSVTDHNLDNEISSLASMQYSPPDAFSLVEQDNDPYFMTKDCGNYNATETSLGFDEKAVLQQLETQLGLSEDANDINNINGSLQELSAADMGNCLVPRPFAWSLDERMLRAMDLFKESVGDGILTQVWAPHTCTSIYSGKSFDLFLQLVNLRTTTPPRLMSQCLSNNKRAALTEIIDVLRALCHAYSLPLALTWIPCCYTEGVGDEASRIRIKDGGRIPGEKTVLCIEESACYINDIVVGGFVHACVEHYLEEGQGVAGKALQSNRPFFYSDVKAYNISAYPLVHHARKYKLNAAVAVRLRSIHTNDDDYIIEFFLPVNMNGSEEQQLLLNNLSDTMQRMCQSLRTVSDAELYGIEGSQVQFSKEEGSHMAPDGDHDSVMPMSLTNNETEAAHNQAMDGSRKQIEKKKSPAEKNISLSVLQQYFSGSLKDAAKSLGVCPTTLKKICRQHGISRWPSRKINKVNRSLKKIQTVLDSVKGVEGGLKFDPYKGGFMSGGSSNQEINAHKSSLFRKKCSVKYPDPAAGSKGENLASAFRHVYMXFQGXVVKLFSVDVDSKPIAMDDGGLRQEPFPVSILESSWCDIAYHSPNTLVADEMADKLGEHHNPTTSSMSDSSNGFGSILRGSRKFENRKHLKAKSPCVDNGSKLVVKAAYGEDRIRFKFDPAAGCLQLYEEVATRFKLQIGSFQLKYLDDDEEWVRMVNDSDLKECMEILDDHGTRAVKFLVLDIPSGLSSRGSNT 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00394 797 ProSiteProfiles PB1 domain profile. 704 786 IPR000270 GO:0005515
Arst10g00394 797 SMART PB1_new 704 786 IPR000270 GO:0005515
Arst10g00394 797 MobiDBLite consensus disorder prediction 661 679 - -
Arst10g00394 797 Gene3D - 702 787 - -
Arst10g00394 797 PANTHER PROTEIN NLP8 205 792 IPR045012 GO:0003700
Arst10g00394 797 MobiDBLite consensus disorder prediction 659 680 - -
Arst10g00394 797 SUPERFAMILY CAD & PB1 domains 700 785 - -
Arst10g00394 797 ProSiteProfiles RWP-RK domain profile. 453 541 IPR003035 -
Arst10g00394 797 Pfam RWP-RK domain 473 521 IPR003035 -
Arst10g00394 797 Pfam PB1 domain 706 783 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00394 Arst-Chr10 3214675 3229748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00394 205 796 NLP Transcription Factor Family AT2G43500 48.885 3.13e-169 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Arst10g00394 PB1 5.4e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00394 - - adu:107468617 1604.34