Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst10g00380 | ATGAATGACCTGTTTTCAGGTTCCTTCAGAAAATACAGCACTGACCTGAAGGAGGAAAGGCAGGTTGATGATGTGGAGGCTGGAAGGGAAAGCCTAAATCTGGAGAAATTCTTTGAAGAAGTGGAGGGTGTAAAAGATGAGATGAAAGTGGTTGAGAGCCTCTGCAGAAAATTGCAAGAAGCCAATGAAGAAAGCAAAACCATTCATGATGCCAAAACCGTTAAGGATCTTCGAGCTCGGATGGACAAAGATGTTGTGCAGGTCCTCAAGCATGTTAAGATCATCAAAACCAAGCTTGAATCTCTACAGCGTTCCAACGCAGCGAATCGAAACGTTCCTGGCTGTGGTCCTGGTTCTTCTGCAGACAGAACCAGGACTTCAGTGGTTAGTGGATTAGGGAAGAAGCTAAAGGACATGATGGACGATTTTCAAGGTTTGAGAGCAAAGATGCAACATGAGTACAAGGAAACCATTGAACGCAGGTACTTCACAATCACAGGGGAGAAGGCAGATGAAGAGACCATAGAGAATTTGATATCAAGTGGAGAGAGTGAAAATTTGGTACAGAAAGCGATTCGAGAACAAGGTAGGGGTCAGATAATGGACACCATATCAGAAATTCAAGAAAGGCATGATGCTGTAAAGGAAATTGAGAAGAATTTGATAGAGTTGCATCAGGTGTTCTTGGACATGGCAGCATTGGTAGAGTCTCAGGGGGAACAGCTTAATAACATAGAGAGTCATGTAGCGCATGCAAGCTCATTCGTTACTCGCGGTGTTTCTCAGCTTCAAGAAGCTAGAGATTATCAAACCAACTCTAGGAAGTGGTATTGCTATGCCATCATTCTTGCTATTCTCCTCATCCTTTTACTCTTGGCTCCTCTCTTGTTAAATCTTTTACCACATTTCAGAAGAAGGTGA | 921 | 0.4311 | MNDLFSGSFRKYSTDLKEERQVDDVEAGRESLNLEKFFEEVEGVKDEMKVVESLCRKLQEANEESKTIHDAKTVKDLRARMDKDVVQVLKHVKIIKTKLESLQRSNAANRNVPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRAKMQHEYKETIERRYFTITGEKADEETIENLISSGESENLVQKAIREQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGEQLNNIESHVAHASSFVTRGVSQLQEARDYQTNSRKWYCYAIILAILLILLLLAPLLLNLLPHFRRR | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst10g00380 | 306 | Gene3D | - | 197 | 296 | - | - | |
| Arst10g00380 | 306 | CDD | SNARE_syntaxin1-like | 203 | 265 | - | - | |
| Arst10g00380 | 306 | SUPERFAMILY | t-snare proteins | 33 | 259 | IPR010989 | GO:0016020|GO:0016192 | |
| Arst10g00380 | 306 | PANTHER | SYNTAXIN | 51 | 285 | IPR045242 | - | |
| Arst10g00380 | 306 | SMART | tSNARE_6 | 199 | 266 | IPR000727 | - | |
| Arst10g00380 | 306 | Pfam | Syntaxin | 36 | 239 | IPR006011 | GO:0016020 | |
| Arst10g00380 | 306 | Coils | Coil | 41 | 64 | - | - | |
| Arst10g00380 | 306 | SMART | SynN_4 | 29 | 155 | IPR006011 | GO:0016020 | |
| Arst10g00380 | 306 | Pfam | SNARE domain | 240 | 292 | IPR000727 | - | |
| Arst10g00380 | 306 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 204 | 266 | IPR000727 | - | |
| Arst10g00380 | 306 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 31 | 161 | - | - | |
| Arst10g00380 | 306 | ProSitePatterns | Syntaxin / epimorphin family signature. | 210 | 249 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Arst10g00380 | 306 | CDD | SynN | 34 | 191 | IPR006011 | GO:0016020 | |
| Arst10g00380 | 306 | FunFam | Syntaxin 132 | 197 | 297 | - | - | |
| Arst10g00380 | 306 | Gene3D | - | 34 | 161 | - | - | |
| Arst10g00380 | 306 | MobiDBLite | consensus disorder prediction | 108 | 127 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst10g00380 | Arst-Chr10 | 3119011 | 3119931 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst10g00380 | 1 | 303 | SNARE and Associated Proteins | AT1G61290 | 73.927 | 1.66e-168 | 468 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst10g00380 | K08486 | - | gmx:100818999 | 464.151 |