Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00379 ATGCTTCCCTTCGTGGCCGTTCATCGCCCGATAAGGCATAATGACCGTGTTTGCGATGGAGAAACAAAGCACAAATATGGAGCGCATTCAAAGAGATCGAGGAGGAAATCAAGATCAAGATCACGGTCCAGATCCCCATCTCGGTCTGAATGCAAAAGGACCTCTGGTTTTGACATGGCACCACCTACTGCAGACGTAACACCTGCTGTCTCAGGGCAAATACTGGGTACTGCTCATACGATTCAAGGAACTTCACAAAATTTGTCACCATTTGGAATATCACAGATGGGAACACTTTCTGTAATGCACATTCAACCTATGACACAGCAGGCTACAAGGCATGCCCGGCGAGTTTATGTAGGTGGGATTCCTCCGTTGACTAATGAACAGACAATTGCAGCATTCTTCAGCCAAGTCATGATTACCATTGGGGGCAATTCTGCTGGAGCAGGCGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTCGCATTTGTGGAGATGAGAACTGTTGAGGAGGCTAGCAATGCAATGGCGTTAGATGGAATAATATTTCAGGGTGTTGCTGTAAGGGTCCGTAGGCCAACAGATTATAATCCTTCATTAGCTGCTGCTCTAGGTCCTAGCCAGCCAAGTCCACACCTCAACTTATCTGCCGTTGGACTTGCTATTGGTGCTGTTGGTGGAACTGAGGGACTTGACCGCATTTTTGTGGGTGGGCTTTCATATTGCTTCACTGAAGAACAAATAAGACAAATACTAGAATCTTTTGGTACTCTCCATGCTTTTGATTTAGTTAGGGATAAAGACACTGGACATTCTAAAGGATATGGTTTCTGTACTTATGAGAATCCAGCGGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAATTGGGTGATAAAACATTGACTGTAAGGCGAGCTACTGTCAGTGGCCATTCTAAAACAGAGCAGGAACACATCTTTGCAAGGGCACAACAGCATATAGCTATGCAG 1008 0.4494 MLPFVAVHRPIRHNDRVCDGETKHKYGAHSKRSRRKSRSRSRSRSPSRSECKRTSGFDMAPPTADVTPAVSGQILGTAHTIQGTSQNLSPFGISQMGTLSVMHIQPMTQQATRHARRVYVGGIPPLTNEQTIAAFFSQVMITIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFQGVAVRVRRPTDYNPSLAAALGPSQPSPHLNLSAVGLAIGAVGGTEGLDRIFVGGLSYCFTEEQIRQILESFGTLHAFDLVRDKDTGHSKGYGFCTYENPAVTDIACASLNGLKLGDKTLTVRRATVSGHSKTEQEHIFARAQQHIAMQKIALEVGGSNIPWAERVPTTIDETPTKVLCLTKAVTSDQLRDDEEYEEILEDMRDECRKFGALVNVIIPRPNPGGELPPGIGKVFLEYSDNAGCSAAKNALHGRKFGGNVVTAVYYSEEKYHSMDYGV 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00379 464 PANTHER RNA-BINDING PROTEIN 26 462 - -
Arst10g00379 464 MobiDBLite consensus disorder prediction 27 42 - -
Arst10g00379 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 307 IPR000504 GO:0003723
Arst10g00379 464 FunFam U2 snRNP auxiliary factor large subunit 358 463 - -
Arst10g00379 464 Gene3D - 358 462 IPR012677 -
Arst10g00379 464 MobiDBLite consensus disorder prediction 17 65 - -
Arst10g00379 464 CDD RRM2_U2AF65 236 312 - -
Arst10g00379 464 Gene3D - 111 212 IPR012677 -
Arst10g00379 464 SUPERFAMILY RNA-binding domain, RBD 237 456 IPR035979 GO:0003676
Arst10g00379 464 SUPERFAMILY RNA-binding domain, RBD 32 196 IPR035979 GO:0003676
Arst10g00379 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 199 IPR000504 GO:0003723
Arst10g00379 464 Gene3D - 231 332 IPR012677 -
Arst10g00379 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 314 IPR000504 GO:0003723
Arst10g00379 464 SMART rrm1_1 117 195 IPR000504 GO:0003723
Arst10g00379 464 SMART rrm1_1 364 450 IPR000504 GO:0003723
Arst10g00379 464 SMART rrm1_1 237 310 IPR000504 GO:0003723
Arst10g00379 464 CDD RRM3_U2AF65 362 450 - -
Arst10g00379 464 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 29 462 IPR006529 GO:0003723|GO:0005634|GO:0006397
Arst10g00379 464 FunFam U2 snRNP auxiliary factor large subunit 111 212 - -
Arst10g00379 464 CDD RRM1_U2AF65 115 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00379 Arst-Chr10 3109839 3115101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00379 238 378 Eukaryotic Initiation Factors Gene Family AT1G49760 26.950 4.32e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00379 K12837 - qsa:O6P43_031823 641.343