Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00375 ATGTACATAGGAACTTCCATGCGAAGGTCTTTCAAGGATTCCTTGAAAGTCCTTGAAGCTGATATTCAGCACGCCAATACCCTGGCATCAGAGTTTCCAAAGGAGTGTGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACTTGTTTCTTTTCTTGGTGCAATGGGCAGATTGCAATCTTGCTGGAGCACTTGGCTTGTTAAGAATCCTAATTTACAAGGTATATGTGGATGGAACAACTACCATGTCTACTCATGAAAGGAAAGCTAGCATTAGAGAATTCTATGCGGTAATTTATCCGTCTTTGTTACAACTTCAGAAAGGGGTTACAGATTCAGAGGATAAGAAACAGAAGGCTGTTTGTATGGAGAGGTATCGAAAAAGAGACGATGAGGATCATCAACTACATTCTGATATAGACATTGAAAGAGAAGAAGAATGTGGAATATGCATGGAAGTGAATAGTAAGATTGTGCTGCCTAACTGCATCCATGCTATGTGCCTGAAATGTTACCGTGAATGGAGAACAAGATCCCAATCGTGTCCCTTTTGTCGCGATAGTCTGAAGAGAGTGAACTCGTGCGATCTCTGGGTATTTACCGATAGCCGGGATGTAGTTGACATGGAAACAGTGACAAGGGAGGATATCAAGAGGCTTTTCATGTACATAGATAAGTTGCCATTGATCATTCCAGACTCGCTTTTCGATCCCTACGACTCTCAACTAAGATAA 747 0.4203 MYIGTSMRRSFKDSLKVLEADIQHANTLASEFPKECDGACLQMRMSYSPAAHLFLFLVQWADCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDSEDKKQKAVCMERYRKRDDEDHQLHSDIDIEREEECGICMEVNSKIVLPNCIHAMCLKCYREWRTRSQSCPFCRDSLKRVNSCDLWVFTDSRDVVDMETVTREDIKRLFMYIDKLPLIIPDSLFDPYDSQLR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00375 248 SMART ring_2 152 189 IPR001841 -
Arst10g00375 248 SUPERFAMILY RING/U-box 137 195 - -
Arst10g00375 248 ProSitePatterns Zinc finger RING-type signature. 167 176 IPR017907 -
Arst10g00375 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 200 IPR013083 -
Arst10g00375 248 FunFam RING/U-box superfamily protein 120 199 - -
Arst10g00375 248 ProSiteProfiles Zinc finger RING-type profile. 152 190 IPR001841 -
Arst10g00375 248 Pfam Zinc finger, C3HC4 type (RING finger) 149 195 - -
Arst10g00375 248 PANTHER RING FINGER PROTEIN 41, 151 9 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00375 Arst-Chr10 3044447 3047090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00375 151 230 C3H Transcription Factor Family AT2G20030 33.333 7.02e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00375 K25840 - pvy:116126787 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g04457 3 119877429 119881131 Arst10g00375 10 3044447 3047090 PCT