Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00355 ATGGCAATAGATCACTACTTCTCTCAGGAATGGAAAACCATCCCAAATTCGGCAGCCGAGACAGAAAGCTGCAATGGCTGTTTTGATTGCAACATCTGCTTAGATTTCGCCCGAGAACCGGTAGTGACTTTATGTGGCCATCTTTACTGCTGGCCTTGCATCTACAAGTGGCTCCATGTCCAAAGTGATTCTCTAGCACCTGATGAGCCACCACAATGTCCTGTTTGCAAGGCTGATATATCCCACACCACAATGGTTCCTCTCTACGGCCGTGGCCAGGCTCCGTCTGATAGGAAGGCATTGTCTCGTGATTTTTTCGTGCCCCCAAGGCCGCCTGCTTCCAGTGCTCAATCTCTATTGACTGCAAATTCTCAGAGTGGACAACAGCTCCCATATCGAAATCCTTATCAGGGTCGGTATTTAAGCCCTGAGGAGGAAGATGCTGCCACTTCGCAGCTGCTCAATGGTGCTACCATGAATCCAGGACCCCAATACCCTTCTTTGGTTGGAATGTTTGGGGAGATGTTTTATGCTAGAGTGTTTGGCAACTCGGAAAACTTGTATGCATACCCAAATTCTTATCAACCCATGACAACTAACAATTCCAGATTGAGAAGGCAAGAGATGGAGGCAGATAAATGCTTGAACAGAATCTCAATTTTTCTCTTTTGTTGCTTCCTTCTGTGTCTCATTGTCTTCTGA 702 0.4658 MAIDHYFSQEWKTIPNSAAETESCNGCFDCNICLDFAREPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEPPQCPVCKADISHTTMVPLYGRGQAPSDRKALSRDFFVPPRPPASSAQSLLTANSQSGQQLPYRNPYQGRYLSPEEEDAATSQLLNGATMNPGPQYPSLVGMFGEMFYARVFGNSENLYAYPNSYQPMTTNNSRLRRQEMEADKCLNRISIFLFCCFLLCLIVF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00355 233 MobiDBLite consensus disorder prediction 114 128 - -
Arst10g00355 233 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Arst10g00355 233 CDD RING-HC_AtRMA-like 28 78 - -
Arst10g00355 233 SUPERFAMILY RING/U-box 26 89 - -
Arst10g00355 233 MobiDBLite consensus disorder prediction 106 128 - -
Arst10g00355 233 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Arst10g00355 233 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Arst10g00355 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Arst10g00355 233 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 127 - -
Arst10g00355 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 127 IPR013083 -
Arst10g00355 233 SMART ring_2 30 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00355 Arst-Chr10 2963537 2965541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00355 13 219 C3H Transcription Factor Family AT4G27470 42.202 2.02e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00355 K10666 - gmx:100816864 318.161