Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00328 ATGGATTTTAATTGGGACGCTGAGCATATATTTCAACTGTATTTGCATGATTATATGGTGAAAAGAGGAATGCACAAAACCGCTGAGATTTTCAGGAAGGAATGCAATCTGACTGACACTGCTGTTACACTTGATTCTCATGATGGGTTCTTGCTCGAATGGTGGTCTGTTTTCTATGAGATATATATGTCTAGGGCTAGACTAGCGAAGGATCAGGCGACTGGGGCAGAATCTTCTAGGAAGGTCCCAGGAAATACATGTAATGCCGGAATTAGTGTCCCTCCAATCCCTCGATCATCCATGAGTGAGCAGAGACCTGACCAATGTCATGTCAACGCCAGATATAACAGGATGATGGCACAACCAGCTGCATGTGTACTACCATCTACACTGAATGCAAAAGAGCATCCTGGATATCTGACTGTAGATGCCGCCAGAGCAAACAATTTGAAGCTGGCTGTGACCAATTCAAGTAATTCGCTGCAAGATGTAGGGAATAATGCTCACAGGGAAGCTTTTAAGGATATTTGCATCGGAAGGGACGTATCTAGGGACCCTCTAGATGTAGCCCAAAGGACATTGCAACATAAACCAAATACTGGTGAATCTTTCAATCGAATGCCAATTAACGGCTGGCCAGTAAATAACCAAGTATTAACCTCATTTTTGCGAGCACCAAACTTTCAACAGCAATTTCAAGCGCAGACAATGCAAAATCCGGAAGCAATTCCTGCTCATGTACGTGCAGGTAGTCCTAAAAGTCAGAGTTTCCCAGTTCCTGGAAACTCTGTTGAGTGCAACAATCATCACACAAAGGTTTCCGAGGCTGAATTAAGCATAAAAGATAGGCAGACAATGGACCCAATGATTAGGGATAAGCAACCACAGATGCAGTCTCAGAATGTTGAGAAGAGCAAAAAGAGAAAGGCAGCGATACCCTTGAGGACTGGAGAAAGTGCCATGGATTGTGTAGATGCAGAAGATGGAAAGCCTATGGATGAAAGTGTGGAGTCTTTCCTGTCATTCGAAAATGAACATGCTGATCATAGAGTTGTGCCTTTCAGCAATCTGACTCGTATTTCAGCTGCACGTGGTAAAAATGAAAATAAAGGTTTTTCATTTGAAGAAGTCAGTTGCCTTCACTCAAGCAAAAACAAAGTTTTATCCACCCATTTTTCATGCGATGGAAAGGTTTTGGCAAGTGCTGGACATGAGAAGAAGGTTTTCATTTGGAACATGGAAACCCTTAATTGTGTTACTACTACAGAAGGACATTCACATCTCATTACAGATGTTCGGTTTAGGCCAAGTTCTACTATATTTGCAACATCTTCCTTTGACCGATCTATAAAACTTTGGGATGCAGCCAGACCCGGCAAGTCATTGTTCCAACTCGACGGTCATGCCGACCAAGTAATGTCATTGGACTTCCATCCAAGGAAGCCTGCCATTCTTTGTTCATGTGATAGCAATGACATAATTCGTCTGTGGGATATCAATCAGCGTACCTGCTTGCATACTACTAAGGGAGGCGCTAGTAAACAAGTCAGGTTCCAGCCTCGTATTGGGAAGTTTCTGGCTGCTGTGTCCGGAAATAATATCAAGATAGTTGATTTTGAGAGCAATAGATTTATGTACCACCTAAAGGATCATGTCAAAGATGTTCTTTCCATTTGTTGGGACATGAGTGGAAACTATGTTGCCTCCGTCAGTGAAGATTGCGCACGTGTCTGGTCTGTTGCAGATGGAAAATGTATAAGTGAATTGAATTCCACTGGGAACAAGTTCCAATCGTGTGTATTTCATCCAGGATATCATAATCTCTTAGTAATTGGTGGCTATGAGTCCCTGGAATTGTGGTGTACAACAGAGAGCAGTAAAACATTGACAGTTCCTGCACACAAGGGACTAATTGCTGGACTAGCACATTCACCACAAGATGAAATGATTGCCTCAGCTAGCCATGATCATTGCGTGAAACTCTGGAAATAA 1992 0.4257 MDFNWDAEHIFQLYLHDYMVKRGMHKTAEIFRKECNLTDTAVTLDSHDGFLLEWWSVFYEIYMSRARLAKDQATGAESSRKVPGNTCNAGISVPPIPRSSMSEQRPDQCHVNARYNRMMAQPAACVLPSTLNAKEHPGYLTVDAARANNLKLAVTNSSNSLQDVGNNAHREAFKDICIGRDVSRDPLDVAQRTLQHKPNTGESFNRMPINGWPVNNQVLTSFLRAPNFQQQFQAQTMQNPEAIPAHVRAGSPKSQSFPVPGNSVECNNHHTKVSEAELSIKDRQTMDPMIRDKQPQMQSQNVEKSKKRKAAIPLRTGESAMDCVDAEDGKPMDESVESFLSFENEHADHRVVPFSNLTRISAARGKNENKGFSFEEVSCLHSSKNKVLSTHFSCDGKVLASAGHEKKVFIWNMETLNCVTTTEGHSHLITDVRFRPSSTIFATSSFDRSIKLWDAARPGKSLFQLDGHADQVMSLDFHPRKPAILCSCDSNDIIRLWDINQRTCLHTTKGGASKQVRFQPRIGKFLAAVSGNNIKIVDFESNRFMYHLKDHVKDVLSICWDMSGNYVASVSEDCARVWSVADGKCISELNSTGNKFQSCVFHPGYHNLLVIGGYESLELWCTTESSKTLTVPAHKGLIAGLAHSPQDEMIASASHDHCVKLWK 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00328 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 465 507 IPR001680 GO:0005515
Arst10g00328 663 SUPERFAMILY WD40 repeat-like 374 663 IPR036322 GO:0005515
Arst10g00328 663 CDD WD40 382 663 - -
Arst10g00328 663 Gene3D - 267 516 IPR015943 GO:0005515
Arst10g00328 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 454 IPR001680 GO:0005515
Arst10g00328 663 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 663 IPR044716 GO:0003714
Arst10g00328 663 ProSiteProfiles LIS1 homology (LisH) motif profile. 7 39 IPR006594 GO:0005515
Arst10g00328 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 465 500 - -
Arst10g00328 663 Pfam LisH 16 34 IPR006594 GO:0005515
Arst10g00328 663 SMART Lish 7 39 IPR006594 GO:0005515
Arst10g00328 663 Gene3D - 517 663 IPR015943 GO:0005515
Arst10g00328 663 ProSitePatterns Trp-Asp (WD) repeats signature. 485 499 IPR019775 -
Arst10g00328 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 631 663 - -
Arst10g00328 663 MobiDBLite consensus disorder prediction 75 106 - -
Arst10g00328 663 MobiDBLite consensus disorder prediction 78 106 - -
Arst10g00328 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 421 IPR001680 GO:0005515
Arst10g00328 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 422 454 - -
Arst10g00328 663 SMART WD40_4 501 538 IPR001680 GO:0005515
Arst10g00328 663 SMART WD40_4 373 412 IPR001680 GO:0005515
Arst10g00328 663 SMART WD40_4 582 621 IPR001680 GO:0005515
Arst10g00328 663 SMART WD40_4 415 454 IPR001680 GO:0005515
Arst10g00328 663 SMART WD40_4 541 579 IPR001680 GO:0005515
Arst10g00328 663 SMART WD40_4 622 663 IPR001680 GO:0005515
Arst10g00328 663 SMART WD40_4 458 498 IPR001680 GO:0005515
Arst10g00328 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 631 663 IPR001680 GO:0005515
Arst10g00328 663 Pfam WD domain, G-beta repeat 545 578 IPR001680 GO:0005515
Arst10g00328 663 Pfam WD domain, G-beta repeat 417 454 IPR001680 GO:0005515
Arst10g00328 663 Pfam WD domain, G-beta repeat 629 663 IPR001680 GO:0005515
Arst10g00328 663 Pfam WD domain, G-beta repeat 460 498 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00328 Arst-Chr10 2775582 2780788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00328 397 662 Miscellaneous Gene Families AT5G08390 24.000 1.27e-17 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Arst10g00328 WD40 0.0051 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00328 - - gsj:114387334 788.875