Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00316 ATGGCTCCCAGGGATAAGACGGCTGCCGTTAAGGTTAACGGCAAAGCTAGCGCCGGCGTTAAAGAGGTACATTTTAGGGGTGTTAGGAAGAGGCCATGGGGAAGGTACGCTGCTGAGATCAGAGATCCAGGCAAGAAGAGCCGCGTTTGGCTCGGCACCTTCGACACCGCCGAGGACGCAGCGCGTGCATACGACGCCGCCGCCCGAGAGTTCCGTGGCCCAAAGGCTAAGACCAACTTCCCCTTTCCTGATTCCGACGACAACAACAATAACAACATCGTCGTCGTTAAGAACAACAACCGCAGCCCCAGCCAGAGCAGCACCGTCGAATCTTCCAGCCGGGACCGCGACTCCTACTCCGCCGCTGCCACCGCAGCAGCTGATTCGTCGCCCTTAGACCTTAACTTGGCCCCCGCTGGAGCCGGATTCTCCGGATCCATTCGGTTCCCATTCCAGCAGCCGTTCGCTGTGTTTCCCTGCCGGATGCCGGCGGCGAAGCAGGCTCTGTACCTCGACGCGGTGCTGCGCGCCGGCATGGTTGGTCACGGCCAGTTCGGTTTTGGTTATAACCGTCCCGCGGCGGCGGGAGCGCAGAGTGACTCGGACTCTTCGTCGGTGATTGATCTGAACCAGCACGACGGCGATGTCGCTAAGAATCACGGAAGAGGCTTAGTTCTAGACCTGAACGAACCTCCTCCACAAGAGATGGCTTGA 714 0.5952 MAPRDKTAAVKVNGKASAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEDAARAYDAAAREFRGPKAKTNFPFPDSDDNNNNNIVVVKNNNRSPSQSSTVESSSRDRDSYSAAATAAADSSPLDLNLAPAGAGFSGSIRFPFQQPFAVFPCRMPAAKQALYLDAVLRAGMVGHGQFGFGYNRPAAAGAQSDSDSSSVIDLNQHDGDVAKNHGRGLVLDLNEPPPQEMA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00316 237 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Arst10g00316 237 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Arst10g00316 237 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Arst10g00316 237 MobiDBLite consensus disorder prediction 197 237 - -
Arst10g00316 237 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Arst10g00316 237 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Arst10g00316 237 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Arst10g00316 237 MobiDBLite consensus disorder prediction 82 120 - -
Arst10g00316 237 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Arst10g00316 237 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 206 - -
Arst10g00316 237 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Arst10g00316 237 MobiDBLite consensus disorder prediction 74 120 - -
Arst10g00316 237 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00316 Arst-Chr10 2633582 2634569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00316 21 184 AP2-EREBP Transcription Factor Family AT3G15210 48.485 2.50e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Arst10g00316 AP2 7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00316 K09286 - gmx:100170742 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g00316 10 2633582 2634569 Arst10g00316 10 2633582 2634569 ECH
Arst8g02821 8 38643440 38644594 Arst10g00316 10 2633582 2634569 ECH
Arst10g00316 10 2633582 2634569 Arst3g01899 3 22259511 22260700 ECH