Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00289 ATGGGGTTGATTGATCTCAACACCACAGAGGAAGATGAAGCACAAACACCATCATCTGCATCCACAGGCTCTGCTTCATCACCTTCTCACTCTGGTATAAGCACTTCAGCTTCAGCTTTGGCTCCACCTTCTTCTTCTTCTTCTGTGTGCTTGGAGCTATGGCATGCTTGTGCTGGCCCTATGATCTCTCTCCCAAAGAAAGGAAGCGTGGTTGTGTACTTACCACAAGGCCACTTTGAACAGGCTCAGGATTTTCCCGTCACTGCCTATAACATCCCACCTCATGTCTGCTGTCGTGTTCTTGATGTGAAGCTCCATGCAGAGGAAGGCAGTGATGAAGTCTATTGCCAGGTCTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGAAAAACTTGCGGCATGGGGTAGTTGATGTTGATGGTGAAGAAGATGATACTGAAGCTGTGGTGAAGTCAACAACACCCCATATGTTTTGCAAGACTCTTACTGCTTCTGACACTAGCACTCATGGTGGATTTTCTGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCTCTGGATTACAGTCAACAGAGGCCTTCACAAGAGCTTGTGGCGAAGGATTTGCATGGCCTTGAATGGAGGTTTAGACATATATACAGAGGGCAGCCACGGAGACATTTGCTCACAACTGGATGGAGTGCATTTGTGAACAAGAAGAAGCTTGTGTCTGGAGATGCTGTGTTATTCCTTAGGGGTGACGATGGAGAATTAAGACTAGGGATTCGTAGGGCTGCTCAGTTGAAGAATGGTGGTATCTTTGCCACTCCTTCTATTCAGCAACTGAATCCAGGCTCAGTCATGAATATTATTAATGCTTTGTCTTCGAGAAGTGCCTTTAGTGTTTGCTATAATCCAAGGGTGAGCTCCTCGGAATTCATCATACCGCCCCACAAATTTTTAAAGAGCCTTGATTTTTGTTATTCAGTTGGAATGAGGTTCCAGATGCGCTTCGAAACTGAAGATGCTGCAGAGCGCAGATTCACTGGATTAATTGCTGGCATTGGTGATGCGGATCCAGTTAGATGGCCAGGTTCAAAATGGAGATGCCTTCTGGTAAGGTGGGATGATGTTGAAGCAAGTAGGCATAACAGGGTTTCCCCATGGGAGATTGAGCCATCTGGGCCTGCTCCTACTTCCAATAACTTGATGGCAGCCGGTTTGAAGAGGAGCCGAATTGGATCTTCAGGGAAACTAGAATTTCCACTTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTGAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACCCCTTTTGATGGTATTAATTCTCAGAGTCCAAGGTTATCAGAGTTAGGGAGGTGTTATCCTGGTTCTATTGGTTCTGGGACATCGGTTGTAGGAAGTAATATCAGAATCCCTCAAGCCGGCTCTGATTTTTCCTACAACAATGGCACAGGCTTTGGGGAATCATTCCGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGCCAACCATATGGAAGGGCCTTGTCTTTTGATGAGGCTCGCACAAATGGTCGCTTTGGACTTTTTGATGGTTATCATCTGGTTAGCCCCAGAAATGGATGGTCAACCCAGGTGCATGACAATCCATCACATCTGCATGCATCTGTAGCATCAATGCAAGTGTCGTCTCCTTCATCTGTGTTAATGTTCCAGCAAGTGGTTAATCCTCTTTCAAACTCTGATTATGATAAAAAGAGTAGCCAGGAGATAGAGGGTACAGTCCATTACCGACGTCCCTATGCAACTGAAGTGAAAGGTGGAACATTTGCATCGTTCCCAACTGATGAGCCTATTTTCTCTGGAAGAGCTAAGGAAGATATGAACTCCCTTGGCATGTTTAACTTCCATAATCAGTTGGGCACTTCAAAGTCTGTTGAATCAGCATTGGCAATGAGAGAAAGTCAAGAGTTGGCATCTTCGTGTAAAAGTAGCTGCAGACTCTTCGGATTCTCTTTAACCGAGGACCCTCACATTGCAAACAAGGAGGCTGACCGACCTTTGATCACTCGGCAATTGAGTTCAGTCCCTACATTTACTCAACACGCCGAGGATAGTTTTCCTCCCGGCCACACTCTCAGGACTAAAGCTGTTGAGAGTAACTTCACCAAAGGTGTGTTGCAGTGTTGA 2205 0.458 MGLIDLNTTEEDEAQTPSSASTGSASSPSHSGISTSASALAPPSSSSSVCLELWHACAGPMISLPKKGSVVVYLPQGHFEQAQDFPVTAYNIPPHVCCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEKNLRHGVVDVDGEEDDTEAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKNGGIFATPSIQQLNPGSVMNIINALSSRSAFSVCYNPRVSSSEFIIPPHKFLKSLDFCYSVGMRFQMRFETEDAAERRFTGLIAGIGDADPVRWPGSKWRCLLVRWDDVEASRHNRVSPWEIEPSGPAPTSNNLMAAGLKRSRIGSSGKLEFPLPNGIGTSDFGESLRFRKVLQGQEILGVNTPFDGINSQSPRLSELGRCYPGSIGSGTSVVGSNIRIPQAGSDFSYNNGTGFGESFRFQKVLQGQEIFPSQPYGRALSFDEARTNGRFGLFDGYHLVSPRNGWSTQVHDNPSHLHASVASMQVSSPSSVLMFQQVVNPLSNSDYDKKSSQEIEGTVHYRRPYATEVKGGTFASFPTDEPIFSGRAKEDMNSLGMFNFHNQLGTSKSVESALAMRESQELASSCKSSCRLFGFSLTEDPHIANKEADRPLITRQLSSVPTFTQHAEDSFPPGHTLRTKAVESNFTKGVLQC 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00289 734 CDD B3_DNA 155 257 IPR003340 GO:0003677
Arst10g00289 734 FunFam Auxin response factor 320 391 - -
Arst10g00289 734 SUPERFAMILY DNA-binding pseudobarrel domain 150 263 IPR015300 -
Arst10g00289 734 Gene3D - 155 259 IPR015300 -
Arst10g00289 734 MobiDBLite consensus disorder prediction 1 39 - -
Arst10g00289 734 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Arst10g00289 734 SMART B3_2 157 259 IPR003340 GO:0003677
Arst10g00289 734 Gene3D - 321 390 - -
Arst10g00289 734 FunFam Auxin response factor 155 259 - -
Arst10g00289 734 MobiDBLite consensus disorder prediction 9 39 - -
Arst10g00289 734 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Arst10g00289 734 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 47 686 IPR044835 GO:0003677|GO:0006355|GO:0009725
Arst10g00289 734 Pfam Auxin response factor 285 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00289 Arst-Chr10 2442319 2447756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00289 45 511 B3 DNA Binding Superfamily AT5G60450 49.383 3.47e-145 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Arst10g00289 B3 3.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00289 K14486 - gmx:100789906 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g00289 10 2442319 2447756 Arst10g00289 10 2442319 2447756 ECH