Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00277 ATGGCTTCTTCTAACAGACACTGGCCAAGCATGTTTAAGTCCAAGCCCACATGGCACCATGATATCACTATCACCGCCACTGCCTCCTCTTCTTCTTCTTCTTCTAGTAGTAGTAGTAGTAGAACCTCTCCTTACTCTTGCGACGACAGAAGCCCTGAGCCCAAGCCCAGGTGGAACCCAAAGCCCGAGCAGATTCGGATCCTGGAGTCCATATTCAACTCTGGGATGGTGAACCCTCCCAGGGATGAGATCAGGAAGATAAGGGCTCAGTTGCAAGAGTACGGTCAAGTTGGTGATGCCAATGTCTTCTACTGGTTCCAGAACCGCAAGTCTAGAACCAAACACAAGCTCCGCCACCTCCACACCAAGAACAACCCTCCTCCTCCTCCTCCTCCTCCGTCATCCACCTCATCCTCCTCCTCCGACAAGTCATCATCCCCACCCACCACCACTACTACTACTACCAATACCAATACCTATTTCAATACCCACAATCACACCGCCACTATTCCACCACCGCCGCCGCCGCCGCCGCCGCCGCACGTGGCTGCTGAGACTTTCATCTTCCCGCTGCAACATCATCAAGGTATAACATCATCCCCGCAAGGGCTTTTCTTCTCTGAGCTCTCCAATGTGGTGCAAGCTCATCATTATCAGCCGTCTCCACCACCACCTCATCAGCTGATGATGCATAACGTCGTTGGTCCCTGCACTAGTCTCTTGCTTAGTGAGATCATGATGAATAATAATGCTTCAAAGAAAGAACAACAAGAACATGCCAGCAACAACAATAAGTCCCTCAAATTAATGCACCACACACCAAAGCTTAGTTTCTGCGTCACTCCACCTACTACTACAACCGCCACCACCGCCACCGTCAACGCTCTCCTCACTCAAGATGCAGTAGGTAGTGGAGATGGAAGTGAGAAAATAACGGTGTTCATAAATGATGTGGCGTTTGAGGTGGCGGCGGGGCCATTCAATGTAAGGGAGGCATTTGGGGAGGATGCAGTCCTCATTCATGCCATAACTGGTCAACCTCTTCTCACTAACCAATGGGGTCTTACCCTCCACTCTCTCCACCATGGCGCTTCTTATTATCTGCTTCTACATACCCTCCCTCACGCACCTTATTAG 1137 0.5066 MASSNRHWPSMFKSKPTWHHDITITATASSSSSSSSSSSSRTSPYSCDDRSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRTKHKLRHLHTKNNPPPPPPPPSSTSSSSSDKSSSPPTTTTTTTNTNTYFNTHNHTATIPPPPPPPPPPHVAAETFIFPLQHHQGITSSPQGLFFSELSNVVQAHHYQPSPPPPHQLMMHNVVGPCTSLLLSEIMMNNNASKKEQQEHASNNNKSLKLMHHTPKLSFCVTPPTTTTATTATVNALLTQDAVGSGDGSEKITVFINDVAFEVAAGPFNVREAFGEDAVLIHAITGQPLLTNQWGLTLHSLHHGASYYLLLHTLPHAPY 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00277 378 CDD homeodomain 54 116 IPR001356 GO:0003677
Arst10g00277 378 SMART HOX_1 53 120 IPR001356 GO:0003677
Arst10g00277 378 Gene3D - 25 115 - -
Arst10g00277 378 MobiDBLite consensus disorder prediction 23 47 - -
Arst10g00277 378 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Arst10g00277 378 MobiDBLite consensus disorder prediction 113 184 - -
Arst10g00277 378 MobiDBLite consensus disorder prediction 168 184 - -
Arst10g00277 378 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 369 IPR044557 GO:0003700|GO:0050793
Arst10g00277 378 MobiDBLite consensus disorder prediction 137 167 - -
Arst10g00277 378 MobiDBLite consensus disorder prediction 23 63 - -
Arst10g00277 378 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Arst10g00277 378 MobiDBLite consensus disorder prediction 48 62 - -
Arst10g00277 378 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Arst10g00277 378 FunFam WUSCHEL-related homeobox 11 55 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00277 Arst-Chr10 2363143 2364413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00277 1 373 Wox Gene Family AT2G33880 43.602 8.55e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Arst10g00277 Homeodomain 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00277 - - adu:107468215 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g00277 10 2363143 2364413 Arst10g00277 10 2363143 2364413 ECH