Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00271 ATGGACAGTCATAGTAATGATGCAAATTCTGAAGGGATTCTTGAGAATGTATGGGCCAAAATTATCAGCAATCAAAGAGGAGCAGATCATGTGAGAACATATGGTGATGGTGATGTTGCAGCAGAACAATCATGGGAAGAACTTCCACAACTTGATGGAAGAGACAACAATAATAACGGTTCAGTGGGAATTCTGCAGAGGCTTCCAAGCTTAGGGAGGTGGATATCAATGGGAGCAGATTTCTGGGAAGATGTTTTAGATGGAGTTGTTAATATTACACCAAATGCAGCAACAACAACAAACAATAACGAACAAGATTGTAATAAGAAGGTAGAACTAGAGAAGAGGGTGATGAAAACAGAGAAAAAAGTGGTGACAAAGCACTACAGAGGAGTAAGGAGAAGGCCATGGGGGAAATATGCGGCGGAGATTCGAGATTCGTCGAAGAAAGGAGCAAGAGTTTGGCTTGGAACATTTGAGACGGCTGAAGAAGCAGCATTGGCATATGATAAAGCTGCTTTGAGGATTAGAGGGCCAAAGGCATACCTCAATTTCCCATTTGACACTGTTTCAAAAGCTATAGAATTTGATCATCATTATTGTAATAAGAGAGTGTCATCTGTGGTGTTGAATGAGCAACCTCCAACAAAGAAGGTAGCAGGAGGGTTTCATGATCATGATGAAGAAGTAGATGTTTTTGTGTTTCAGGATTTAGGAAGTGATTACTTGGATAATTTGCTGTCTTCTTTTTAA 753 0.4011 MDSHSNDANSEGILENVWAKIISNQRGADHVRTYGDGDVAAEQSWEELPQLDGRDNNNNGSVGILQRLPSLGRWISMGADFWEDVLDGVVNITPNAATTTNNNEQDCNKKVELEKRVMKTEKKVVTKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFETAEEAALAYDKAALRIRGPKAYLNFPFDTVSKAIEFDHHYCNKRVSSVVLNEQPPTKKVAGGFHDHDEEVDVFVFQDLGSDYLDNLLSSF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00271 250 ProSiteProfiles AP2/ERF domain profile. 128 186 IPR001471 GO:0003700|GO:0006355
Arst10g00271 250 PRINTS Ethylene responsive element binding protein signature 152 168 IPR001471 GO:0003700|GO:0006355
Arst10g00271 250 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Arst10g00271 250 Pfam AP2 domain 128 178 IPR001471 GO:0003700|GO:0006355
Arst10g00271 250 SMART rav1_2 128 192 IPR001471 GO:0003700|GO:0006355
Arst10g00271 250 Gene3D AP2/ERF domain 127 188 IPR036955 GO:0003700|GO:0006355
Arst10g00271 250 FunFam Ethylene-responsive transcription factor 2 127 188 - -
Arst10g00271 250 PANTHER DNA-BINDING DOMAIN 109 203 IPR044808 GO:0003700|GO:0009873
Arst10g00271 250 SUPERFAMILY DNA-binding domain 128 187 IPR016177 GO:0003677
Arst10g00271 250 CDD AP2 127 186 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00271 Arst-Chr10 2342132 2342894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00271 13 202 AP2-EREBP Transcription Factor Family AT4G18450 44.330 2.57e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Arst10g00271 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00271 - - aip:107624160 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g00271 10 2342132 2342894 Arst10g00271 10 2342132 2342894 ECH