Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00200 ATGAACCCCTTCTTTTACAGATTCTTGATTCTCCTTGCTCTGTTTTCTCTCGTGGAATCTTCTTCATCATGCAGCAGCAACAATAGAGACCACGAGCTTGTCTTAAAAGCCTTCCAATATGTCTCTGGATTCAAACCTTCATGGTTCCAAACAACACACCAACCTTCTTCTTCTTCTTCTAACTGTTCGGTACAAGAGTCATCTCCCATTATTAAGAACATAGAGCTTCCTTCAAGAAACTTAAGCGGCAATATCTCATGGAGCTACCTAAAGAACATGTCAAACCTGCAAGTTCTCGATCTCTCCGGAAATTCCCTGCAAGGCCAAGTATCAAACATGTTGTGGGCAACTCCAAACTTGTTAGTAGTAAACCTCTCCAGAAACAGGTTCGGAGGAACCATTGCTTTCAACCAACTCACAACCGTTTCATCATCGCTTCAAGTTCTGAACCTCTCACACAACAGGCTCACCAATCAGGTTCACCTCTCCGGTTTCACAAACCTCAAAACCCTCGACCTTTCTCACAACCACCTTGGAACCTTACCTTCGGGGTTCCAGAACCTCAAAAAACTCCAACACCTCGATCTCTCTAACTGCAACATCGAAGGACCAGTGAAACAAGTCTCTTCCCTTCACTCACTCACCTACCTCGACCTCTCTAACAACACGTTGAATGGAACCTTCCCTTCAGATTTCCCTCCATTGAACACCATCAAGTTCCTCAACATCTCACACAACAACTTCATCAAATCCACAGAACTAAGCCCAAACAAGTACAAGAAGTTCGGCCAATCGGCGTTCATAAACGCCGGCAACAACTTCCACTTGAACTTCAACGCATCCAACCTCCATTCAAAGAAGCAACACCACCAACCACCAATGCAACCAACTAATAACAAACACCACAAGCACAAGTCAAAACACAAAACCGTTTTGCTTGTGGCGGCATCGTGTGCTTCAGGGGTAGTTTTGGTATTGTCGTTGAGCGCGTGCATGTTACGGTGTTACTGTAGGAAGAAGGAAGAGGCGAAGAGGAACAAGTGGGCCATATCGAAACCTGTAGCGTTGACGAGCATCAAGATGGAGAAATCAGGGCCGTTCGCCTTCGAGACGGAGTCAGGGACGTCATGGGTGGCTGACCTGAAAGAACCGTCGTCGGCCGCCGTCGTGATGTTCGAGAAGCCGTTGATGAGTTTGACTTTCAAGGACTTGATGAGTGCCACGTCACACTTCGGTAAAGACTCACAGCTTGCTGAGGGTAGATGTGGGCCCGTGTACCGAGCTGTTCTACCAGGAGATATCCACGTGGCAATCAAGGTTTTGGAAAACGCAAGAGACGTTGATCACGATGACGCTGTCAACATCTTCGTTGACCTCTCCAGGCTGAAGCACCCTAACCTCTTGCCCCTCTCCGGTTACTGCATTGCAGGGAAGGAGAAGCTGGTGATGTATGAGTTCATGTCAAACGGGGATTTAGGTAGGTGGTTACACGAGCTACCAACGGGTGACACCAACGTGGAAGATTGGAGTGGTGACACGTGGGAGATTCAAAACGGTATCGCGTCACATGAAAAGATGGCTTGGCCAACACGACACCGTATCGCCGTTGGTATGGCGCGTGGTCTCGCATTCCTCCACCACGCCGGATCCAGGCCTGTCGTTCACGGCCACCTGGTAACATCTAATATTTTACTCTCTGATGACTTCGAACCACGAATCGCTGATTTCGGGTTGAGGAAATTCGGGCAGGAACAGAACGCGCCGAATTGCAGCACCGAGACTGACGTGTACTGCTTCGGTGTGGTGCTGATGGAGCTTCTGACGGGACGGCATGGCACGGCGGAGACAGTGGTGTCGGTGAGGAAGCTTGTTAGGGAGGGCCACGGTGTTCGCGCGTTGGATGAGAGGCTCGGATTCGGTGACTCAGAGGCTGAGATGGTGGAGAGCCTCCGAGTCGCGTATCTTTGCACCGCCGAGTCGCCGGCGAAGAGACCCACCATGCAGCAGGTCTTGGGTCTTCTCAAGGACATTCATCCGAGTGGCGGACTCGACTGTTACTATAGGAGGTGGCAAAATTGGCAATTGAGTTTTTGA 2094 0.4976 MNPFFYRFLILLALFSLVESSSSCSSNNRDHELVLKAFQYVSGFKPSWFQTTHQPSSSSSNCSVQESSPIIKNIELPSRNLSGNISWSYLKNMSNLQVLDLSGNSLQGQVSNMLWATPNLLVVNLSRNRFGGTIAFNQLTTVSSSLQVLNLSHNRLTNQVHLSGFTNLKTLDLSHNHLGTLPSGFQNLKKLQHLDLSNCNIEGPVKQVSSLHSLTYLDLSNNTLNGTFPSDFPPLNTIKFLNISHNNFIKSTELSPNKYKKFGQSAFINAGNNFHLNFNASNLHSKKQHHQPPMQPTNNKHHKHKSKHKTVLLVAASCASGVVLVLSLSACMLRCYCRKKEEAKRNKWAISKPVALTSIKMEKSGPFAFETESGTSWVADLKEPSSAAVVMFEKPLMSLTFKDLMSATSHFGKDSQLAEGRCGPVYRAVLPGDIHVAIKVLENARDVDHDDAVNIFVDLSRLKHPNLLPLSGYCIAGKEKLVMYEFMSNGDLGRWLHELPTGDTNVEDWSGDTWEIQNGIASHEKMAWPTRHRIAVGMARGLAFLHHAGSRPVVHGHLVTSNILLSDDFEPRIADFGLRKFGQEQNAPNCSTETDVYCFGVVLMELLTGRHGTAETVVSVRKLVREGHGVRALDERLGFGDSEAEMVESLRVAYLCTAESPAKRPTMQQVLGLLKDIHPSGGLDCYYRRWQNWQLSF 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00200 697 ProSiteProfiles Leucine-rich repeat profile. 167 189 IPR001611 GO:0005515
Arst10g00200 697 ProSiteProfiles Leucine-rich repeat profile. 145 166 IPR001611 GO:0005515
Arst10g00200 697 Pfam Protein tyrosine and serine/threonine kinase 414 582 IPR001245 GO:0004672|GO:0006468
Arst10g00200 697 SUPERFAMILY L domain-like 67 286 - -
Arst10g00200 697 SMART LRR_typ_2 93 116 IPR003591 -
Arst10g00200 697 SMART LRR_typ_2 211 234 IPR003591 -
Arst10g00200 697 SMART LRR_typ_2 165 187 IPR003591 -
Arst10g00200 697 FunFam Calmodulin-binding receptor kinase CaMRLK 144 254 - -
Arst10g00200 697 Gene3D Phosphorylase Kinase; domain 1 371 486 - -
Arst10g00200 697 Pfam Leucine Rich Repeat 95 111 IPR001611 GO:0005515
Arst10g00200 697 Pfam Leucine rich repeat 145 201 IPR001611 GO:0005515
Arst10g00200 697 Gene3D Ribonuclease Inhibitor 34 141 IPR032675 -
Arst10g00200 697 Gene3D Ribonuclease Inhibitor 142 261 IPR032675 -
Arst10g00200 697 FunFam Putative LRR receptor-like serine/threonine-protein kinase 372 486 - -
Arst10g00200 697 PRINTS Leucine-rich repeat signature 211 224 - -
Arst10g00200 697 PRINTS Leucine-rich repeat signature 168 181 - -
Arst10g00200 697 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 50 677 - -
Arst10g00200 697 ProSiteProfiles Protein kinase domain profile. 411 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst10g00200 697 SUPERFAMILY Protein kinase-like (PK-like) 399 674 IPR011009 -
Arst10g00200 697 Gene3D Transferase(Phosphotransferase) domain 1 487 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00200 Arst-Chr10 1828588 1831072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00200 70 677 Receptor kinase-like Gene Family AT5G07280 30.862 2.42e-70 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Arst10g00200 PK_Tyr_Ser-Thr 3.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00200 - - gmx:100778920 917.146