LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g00195	ATGGCTGAGGATAAGGAGATGTCTACCTCTGTTGTCAACGGGAATGATTCTCTCACTGGACACATCATATCTACAACTATTGGAGGCAAAAATGGCGAGCCCAAACAGACTATTAGCTACATGGCCGAGCGTGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGGCGAAATGCTTGGAAACTGGAGAGGCAGTGGCCATTAAGAAGGTTTTGCAAGACCGAAGATACAAGAATCGTGAGCTACAGCTAATGCGTGTGATGAATCATCCAAATGTGATCTCCCTGAAGCATTGTTTCTTTTCCACAACAAGTACAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAATCCATGTATCGGGTCTTAAAGCATTATAGTAATGCTAATCAAAGAATGCCCATTATCTATGTAAAACTTTACATGTACCAGATTTTCAGGGGCTTGGCTTATATACACACGGTTCCTCGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTACCCACCAAGTTAAGCTATGTGATTTTGGAAGTGCAAAAGTGCTAGTGAAAGGTGAAGCTAACATATCATACATATGCTCACGTTTCTATCGAGCTCCAGAGCTTATATTTGGTGCCACAGAGTATACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGTCAGCCACTATTCCCAGGTGAAAATGCAGTGGACCAGCTTGTACATATTATACAGGTGCTTGGCACACCCACTCGGGAGGAAGTACGTTGTATGAACCCAAATTACAATGACTTCAGGTTTCCACAGATCAAAGCACATCCATGGCACAAGATATTCCACAAAAAGATGCCTCCGGAAGCTATAGATCTTGCCTCCCGGCTTTTGCAGTATTCCCCTAGTCTCCGGTGCACTGCGCTAGAAGCATGTGCACATCCTTTCTTTGATGAACTCCGAGAACCTAATGCCCGCCTGCCAAATGGTCGCCCATTCCCACCTCTATTTGACTTCAAACAGGAACTGTCTGGGGCGTCTCCAGAGCTCATCAATAAGTTGATACCGGATCACTTGAAGCGGCAAATAGGGCTACAGTTTTCTCCCATGGAAGGATCTTGA	1143	0.4392	MAEDKEMSTSVVNGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMNHPNVISLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYSNANQRMPIIYVKLYMYQIFRGLAYIHTVPRVCHRDLKPQNILVDPLTHQVKLCDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIQVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFDFKQELSGASPELINKLIPDHLKRQIGLQFSPMEGS	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g00195	380	Gene3D	Phosphorylase Kinase; domain 1	25	119	-	-
	Arst10g00195	380	CDD	STKc_GSK3	35	327	IPR039192	-
	Arst10g00195	380	ProSitePatterns	Protein kinases ATP-binding region signature.	46	70	IPR017441	GO:0005524
	Arst10g00195	380	SUPERFAMILY	Protein kinase-like (PK-like)	39	348	IPR011009	-
	Arst10g00195	380	ProSiteProfiles	Protein kinase domain profile.	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g00195	380	Pfam	Protein kinase domain	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g00195	380	Gene3D	Transferase(Phosphotransferase) domain 1	120	367	-	-
	Arst10g00195	380	SMART	serkin_6	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g00195	380	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	161	173	IPR008271	GO:0004672\|GO:0006468
	Arst10g00195	380	FunFam	Shaggy-related protein kinase kappa	120	367	-	-
	Arst10g00195	380	FunFam	Glycogen synthase kinase-3 beta	24	119	-	-
	Arst10g00195	380	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	5	368	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g00195	Arst-Chr10	1797174	1801469	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g00195	44	340	MAP Kinase Gene Family	AT3G59790	34.740	2.84e-57	190

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Arst10g00195		Pkinase	8.1e-65	CL0016