LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g00194	ATGGAAGGTGTCAAGTTGGTTGCTTGGTTCTTCTCCTTGTTTATTTTGTGTTCGATGCCAATGGTTGTTGAGGGCACTGATAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTTGCTGCTTTGATGTCCATGAAGAATAAAATGAACGATGAATTGCACGTCTTGAATGGCTGGGATATTAATTCGGTTGACCCTTGCACTTGGAACATGGTTGGTTGCTCTGCTGAAGGTTATGTCATTTCCCTGGAAATGGCCAGTGCTGGTTTATCTGGAACTCTTTCGTCAGGAATTGGAAATTTGAGCCATCTCCGAACATTGTTACTGCAGAACAATCAGTTATCTGGTCCTATCCCGGCTGAGATAGGCAAGTTGTCAGAGCTTCAAACTCTAGACCTTTCCGGTAACCAGTTTGTTGGAGAAATTCCTAGTTCTTTGGGCTTATTGTCTCAACTAAGTTACTTGCGGCTCAGCAAAAATAATCTATCTGGACAGATCCCTCCACTTGTTGCTAACTTGACAGGCCTTTCATTCTTGGACTTGTCATTCAATAATCTCAGTGGTCCCACTCCAAAAATTTTGGCAAAAGGTTACAGTATTTCAGGAAATAACTTCCTTTGTACATCTCCTTCGGAACATTGTATGGACATTTCAAAACCACTAAACGATACAGGATCATCTCAGAAAGTCAAGAGTCATCACCAAAGGGTGATTTCTGTTGTTGTTGGCATCAGTTGCACATTTATAATTTCAGTGATGCTTGTGTGTTGGTTGCATTGGTACAGATCGCGCATACTCTATACATCTTATGTGGAGCAAGATTGTGAATTTGATATTGGCCATTTGAAGAGGTTCACCTTCCGTGAACTACAAATTGCTACTGGAAATTTCAGTCAAAAGAACATCCTTGGACAAGGAGGCTTTGGCATTGTCTACAAAGGATGCCTTACAAACAAAATGCTGGTGGCAGTGAAGAGGCTGAAAGATCCCAATTACACTGGAGAAATGCAATTTCAAACTGAAGTTGAGATGATCGGCTTGGCCGTGCATCGTAACCTCTTGCGTCTCTATGGATTTTGTATGACTCCAGATGAAAGGTTACTTGTTTATCCTTACATGCCTAATGGCAGTGTTGCTGATCGCTTGAGAGACACGTGCCGAGAAAAGCCATCTCTGGATTGGAACAGGCGAATGCGAGTTGCTGTTGGCGCTGCACGCGGGCTTCTGTATTTACACGAGCAGTGCAATCCTAAAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTGCTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGCCTTGCTAAGCTGTTGGATCAAAGGGATTCGCATGTCACTACCGCCGTGCGAGGTACAGTAGGCCACATTGCCCCGGAGTATCTCTCCACTGGACAGTCTTCTGAGAAAACAGATGTTTTTGGATTTGGCATATTACTTCTGGAGCTCATAACAGGACAAAAGGCACTAGATGCTGGGAATGGTCAAGTACAAAAGGGAATGATTCTTGATTGGGTTAAGACATTATTTGAGGAGAAGCGGCTAGAAGTGTTAGTTGATAGGGATCTAAGGGGATGCTTTGATCCAGTTGAGTTAGAAATGGCAGTGGAGTTGTCTTTACAGTGCACTCAGTCACTTCCGAGTCTGCGGCCGAAGATGTCGGAAGTCTTGAAGATTCTAGAAGGCCTGGTTGGGCAGCCGGCGCCGCCGGAGGAGTCACAAGGAGGGTCTAACTTATATGAAGAAAGAGCATGCAGTTTCTCCCAAAATTATAGTGATGTTCATGAAGAACCTTCCTTTGTTATTGAAGCCATTGAGCTTTCTGGTCCTCGGTGA	1863	0.4391	MEGVKLVAWFFSLFILCSMPMVVEGTDSLLSPKGVNYEVAALMSMKNKMNDELHVLNGWDINSVDPCTWNMVGCSAEGYVISLEMASAGLSGTLSSGIGNLSHLRTLLLQNNQLSGPIPAEIGKLSELQTLDLSGNQFVGEIPSSLGLLSQLSYLRLSKNNLSGQIPPLVANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCTSPSEHCMDISKPLNDTGSSQKVKSHHQRVISVVVGISCTFIISVMLVCWLHWYRSRILYTSYVEQDCEFDIGHLKRFTFRELQIATGNFSQKNILGQGGFGIVYKGCLTNKMLVAVKRLKDPNYTGEMQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDTCREKPSLDWNRRMRVAVGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNGQVQKGMILDWVKTLFEEKRLEVLVDRDLRGCFDPVELEMAVELSLQCTQSLPSLRPKMSEVLKILEGLVGQPAPPEESQGGSNLYEERACSFSQNYSDVHEEPSFVIEAIELSGPR	620

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g00194	620	FunFam	Somatic embryogenesis receptor kinase 1	267	372	-	-
	Arst10g00194	620	SMART	LRR_typ_2	101	124	IPR003591	-
	Arst10g00194	620	SMART	LRR_typ_2	173	196	IPR003591	-
	Arst10g00194	620	SMART	LRR_typ_2	125	149	IPR003591	-
	Arst10g00194	620	Pfam	Leucine rich repeat N-terminal domain	36	75	IPR013210	-
	Arst10g00194	620	SUPERFAMILY	Protein kinase-like (PK-like)	281	581	IPR011009	-
	Arst10g00194	620	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	7	568	-	-
	Arst10g00194	620	Gene3D	Phosphorylase Kinase; domain 1	267	372	-	-
	Arst10g00194	620	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	35	216	-	-
	Arst10g00194	620	FunFam	Somatic embryogenesis receptor-like kinase 1	373	581	-	-
	Arst10g00194	620	Gene3D	Transferase(Phosphotransferase) domain 1	373	574	-	-
	Arst10g00194	620	SUPERFAMILY	L domain-like	37	209	-	-
	Arst10g00194	620	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	419	431	IPR008271	GO:0004672\|GO:0006468
	Arst10g00194	620	SMART	serkin_6	297	568	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g00194	620	ProSiteProfiles	Protein kinase domain profile.	297	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g00194	620	Gene3D	Ribonuclease Inhibitor	35	216	IPR032675	-
	Arst10g00194	620	ProSitePatterns	Protein kinases ATP-binding region signature.	303	325	IPR017441	GO:0005524
	Arst10g00194	620	Pfam	Protein kinase domain	298	567	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g00194	Arst-Chr10	1792263	1796146	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g00194	43	620	Receptor kinase-like Gene Family	AT5G45780	73.322	0.0	835

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Arst10g00194		Pkinase	8.5e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g00194	-		-	gmx:100810610	1080.47