Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00183 ATGGCCACTTCCGCCGCCGCCACAACTGCCGCAGCGCCACGCCAGCTGTCACAGAAGGAGCAGGACATCCAGATGATGCTTGCTGCTGAGGTCCACCTCGGAACCAAAAATTGCGACTTCCAGATGGAACGCTACGTCTTCAAACGCCGAAATGATGAGTGTGTCGATTATGGCGAGTTTGAAGGGATTATTGTTGCCATCGAGAACCCTCAGGACATCATTGTTCAGTCTGCTAGGCCATATGGTCAGAGGGCAGTCTTGAAGTTTGCCCAATACACGGGTGCGAATGCAATTGCTGGAAGGCACACTCCTGGAACATTCACTAATCAGATGCAGACATCGTATAACGAGCCTCGCTTACTCATTCTGACTGATCCAAGGACTGATCATCACGTGCCACTTTTTTTAGATCCCATTAAGGAAGGTGCTCTTGGAAATATTCCAACGATTGCCTTCTGCGACACTGATTCTCCGATGCGCTATGTTGATGTTACCATTCCTGCCAATAACAAGGGGAAGCACAGTATTGGTTGCTTGTTTTGGTTATTAGCAAGGATGGTTCTGCAGATAAGGGGTACTATTCGTCCAGGGCTTAAGTGGGATGTGATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAGGAGGAATTACCAGCTGCCCCAGAATATGCCATTCAAGATTTTGGTGCTGCTGGCATTGCCGGCTTCCCCGCAGCTGATGGGGAATGGGGGGCTGTTACAGCTGAACAATCCTGGACTGAACCGGTTCCTCAGCAACCCATTGCAGCTGCTCCTGCGAACTGGGCCCCAGACGCCGGTAAGAATAATTATTTCCACTCTGGATCTGTTAAATTTGATGCAACATAA 885 0.4927 MATSAAATTAAAPRQLSQKEQDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDECVDYGEFEGIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHHVPLFLDPIKEGALGNIPTIAFCDTDSPMRYVDVTIPANNKGKHSIGCLFWLLARMVLQIRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEELPAAPEYAIQDFGAAGIAGFPAADGEWGAVTAEQSWTEPVPQQPIAAAPANWAPDAGKNNYFHSGSVKFDAT 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00183 294 Gene3D - 22 224 - -
Arst10g00183 294 NCBIfam 30S ribosomal protein S2 19 211 IPR005707 GO:0003735|GO:0006412|GO:0015935
Arst10g00183 294 SUPERFAMILY Ribosomal protein S2 18 205 IPR023591 -
Arst10g00183 294 Hamap 40S ribosomal protein SA [rps-0]. 10 252 IPR027498 GO:0003735|GO:0006412|GO:0015935
Arst10g00183 294 FunFam 40S ribosomal protein SA 22 225 - -
Arst10g00183 294 PANTHER 40S RIBOSOMAL PROTEIN SA 12 278 IPR005707 GO:0003735|GO:0006412|GO:0015935
Arst10g00183 294 ProSitePatterns Ribosomal protein S2 signature 1. 23 34 IPR018130 GO:0003735|GO:0005840|GO:0006412
Arst10g00183 294 Pfam Ribosomal protein S2 113 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Arst10g00183 294 PRINTS Ribosomal protein S2 signature 162 176 IPR001865 GO:0003735|GO:0005840|GO:0006412
Arst10g00183 294 PRINTS Ribosomal protein S2 signature 141 152 IPR001865 GO:0003735|GO:0005840|GO:0006412
Arst10g00183 294 PRINTS Ribosomal protein S2 signature 23 41 IPR001865 GO:0003735|GO:0005840|GO:0006412
Arst10g00183 294 CDD RPS2 26 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00183 Arst-Chr10 1739857 1742163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00183 5 272 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 66.787 2.74e-126 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00183 K02998 - gmx:100786575 385.956