Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00176 ATGGCGAGGCCTTCGAAGCCGCAAGTTTCTTCCGACGAAGCTATCTCTAGCGGTTCGAGCTCCGAGGAGGAGGAGCAGGTCAACCAGCAGATCAATGAAGAGGACGAGGAGGAGCTTGAGGCGGTGGCTCGTCAAGCTAGCTCCGACGACGACGACGACGAAGCCGGAAATGATAATTCGCACGATGACGACGAAGATCCTGCTGCCGCCGGAGATGCTGACGAGGATGAGCAGGGTGAAGATGCTGTTGATCCTGGCAAGCGTGAGAAAGCTAGATTGAAAGAGATGCAGAAAATGAAGAAGCAGAAGATTCAGGAGATATTGGATGCACAAAATGCAGCCATAGATGCCGACATGAACAATAGAGGAAAAGGAAGACTGAAGTATCTCTTACAGCAGACTGAGCTGTTTGCACATTTTGCAAAAGGTGATCAATCTTCATCTCAGAAGGCAAGAGGAAGGGGCCGCCATGCATCAAAAGTGACAGAAGAGGAGGAAGATGAAGAATACCTAAAAGAAGAGGAAGATGGTTTATCAAACACTCGTCTCGTGACACAACCATCATGCATCCAAGGGAAATTGAGGGACTACCAACTTGCTGGGCTAAATTGGCTTATAAGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCTTTGTTGGGTTATTTACATGAGTTCAGAGGAATCAAAGGCCCTCATATGGTTGTTGCTCCCAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGTTTTTGTCCTATTCTACGTGCAGTAAAGTTCCTTGGCAACCCTGAAGAGAGGAGACATATAAGGGAGGAATTACTGGTAGCCGGGAAGTTCGATGTCTGTGTTACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTACATTGCGTCGATTTAGTTGGCGTTACATCATTATCGATGAAGCCCATCGAATTAAGAATGAAAATTCCTTGCTTTCCAAAACAATGAGACTCTACAACACAAATTATCGCCTCCTTATTACCGGCACACCGCTTCAGAACAATCTTCATGAACTCTGGTCTCTGCTCAACTTTCTTCTTCCCGAAATTTTTAGTTCTGCTGAAACCTTTGATGAGTGGTTTCAAATCTCTGGTGAGAATGACCAACAAGAGGTTGTCCAGCAATTACACAAGGTCCTCCGGCCATTTCTTCTTCGTAGGTTGAAGTCCGATGTTGAGAAAGGGTTGCCGCCTAAAAAGGAAACCATTCTTAAAGTAGGTATGTCACAAATGCAGAAACAGTACTATAGAGCGCTTCTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAGCGCCTCCTGAATATAGCTATGCAGCTACGAAAATGTTGCAATCATCCATATCTTTTCCAGGGTGCTGAACCCGGTCCTCCATATACAACAGGGGATCATCTCATTACTAATGCTGGTAAAATGGTTCTCTTGGACAAGTTACTTCCTAAATTGAAGGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGGTATCACTATTGTCGCATAGATGGCAATACTGGTGGAGATGAGCGGGATGCTTCCATTGACACTTTCAACAAACCTGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCTGGAGGTCTTGGAATTAACCTTGCTACTGCTGATGTTGTCATCCTATATGATAGTGACTGGAACCCACAAGTTGACTTGCAAGCCCAGGATCGTGCTCATAGGATAGGTCAAAAGAAAGAAGTCCAAGTTTTTCGCTTTTGCACAGAGTATACAATTGAGGAGAAGGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTAGTGATTCAGCAAGGACGGTTGGCTGAGCAAAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGAGCAGAAATGGTTTTCAGTTCCAAAGATAGCACTATTACAGATGAGGACATTGATAGAATCATTGCTAAAGGAGAGGAAGCAACTGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAATTCAAGATGGATGACACTGCCGAGTTATATGATTTTGATGATGATAAGGATGAGAACAAAGTTGATTTCAAAAAAATTGTGAGTGACAATTGGATTGAACCACCAAAAAGAGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACATTACGACAAGGAGGTCCTGCTAAACCAAAGGAGCCACGAATTCCTAGGATGCCTCAGTTGCACGACTTCCAGTTTTTTAACACACAAAGGCTTAGTGAGTTGTATGAAAAGGAAGTGCGCTACCTAATGCAAACGCATCAAAAGAATCAGATAAAGGATTCAATAGATGTTGATGAACCAGAAGATGTGGGAGATCCATTGACTGCTGAAGAATTGGAAGAAAAGGAGCGCCTTCTAGAGGAGGGATTTTCTTCATGGAGCCGGAGGGATTTTAATACTTTCATCAGGGCTTGCGAAAAGTATGGCCGAAATGATATAAAAGGTATTGCTTCTGAGATGGAAGGGAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAGAGGGGGGAGGCTAGAATTTCACGGAAAGATGAAATCATGAAAGCTATTGGGAAGAAGTTGGACCGATACAAGAATCCATGGCTAGAGTTAAAGATACAGTATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGACAGGTTCATGATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTGAAGGCAGCATTTCGAACATCACCCTTGTTTCGTTTTGACTGGTTTGTTAAGTCTCGCACAACACAAGAACTTGCAAGGAGGTGTGACACACTCATTCGCCTGGTAGAAAAGGAAAACCAAGAATATGACGAGAGGGAGAGACAAGCGCGCAAAGAGAAGAAACTTGCAAAGACCATGACCCCATCAAAGCGGACCCTGGCAAGACAGACAGAATCTCCATCTTCTTTGAAGAAGCGCAAGCAATTAACCATGGATGATTATGGAAGTGTGGGAAAAAGGAGAAAATAA 3210 0.4262 MARPSKPQVSSDEAISSGSSSEEEEQVNQQINEEDEEELEAVARQASSDDDDDEAGNDNSHDDDEDPAAAGDADEDEQGEDAVDPGKREKARLKEMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKARGRGRHASKVTEEEEDEEYLKEEEDGLSNTRLVTQPSCIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYHYCRIDGNTGGDERDASIDTFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKVDFKKIVSDNWIEPPKRERKRNYSESEYFKQTLRQGGPAKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEDVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKGIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKTMTPSKRTLARQTESPSSLKKRKQLTMDDYGSVGKRRK 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00176 1069 Coils Coil 93 113 - -
Arst10g00176 1069 Gene3D - 933 1036 - -
Arst10g00176 1069 SMART sant 845 894 IPR001005 -
Arst10g00176 1069 SMART sant 947 1008 IPR001005 -
Arst10g00176 1069 CDD SF2_C_SNF 495 620 - -
Arst10g00176 1069 SMART ultradead3 190 382 IPR014001 -
Arst10g00176 1069 Pfam Helicase conserved C-terminal domain 497 609 IPR001650 -
Arst10g00176 1069 Pfam SNF2-related domain 207 474 IPR000330 GO:0005524|GO:0140658
Arst10g00176 1069 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 757 847 IPR036306 GO:0003677|GO:0006338|GO:0031491
Arst10g00176 1069 CDD DEXHc_SMARCA1_SMARCA5 191 411 IPR044754 GO:0005524
Arst10g00176 1069 MobiDBLite consensus disorder prediction 51 80 - -
Arst10g00176 1069 Coils Coil 1002 1029 - -
Arst10g00176 1069 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 98 1054 - -
Arst10g00176 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 409 IPR027417 -
Arst10g00176 1069 MobiDBLite consensus disorder prediction 142 174 - -
Arst10g00176 1069 Gene3D - 195 410 IPR038718 -
Arst10g00176 1069 MobiDBLite consensus disorder prediction 9 26 - -
Arst10g00176 1069 FunFam ISWI chromatin-remodeling complex ATPase CHR11 415 707 - -
Arst10g00176 1069 MobiDBLite consensus disorder prediction 1016 1033 - -
Arst10g00176 1069 Pfam SLIDE 902 1012 IPR015195 GO:0003677|GO:0005634|GO:0006338
Arst10g00176 1069 Pfam HAND 758 840 IPR015194 GO:0003677|GO:0006338|GO:0031491
Arst10g00176 1069 ProSiteProfiles SANT domain profile. 844 896 IPR017884 -
Arst10g00176 1069 SUPERFAMILY Homeodomain-like 900 1022 IPR009057 -
Arst10g00176 1069 SMART helicmild6 525 609 IPR001650 -
Arst10g00176 1069 FunFam ISWI chromatin-remodeling complex ATPase CHR11 933 1036 - -
Arst10g00176 1069 MobiDBLite consensus disorder prediction 1 96 - -
Arst10g00176 1069 FunFam Chromatin-remodeling complex ATPase 195 410 - -
Arst10g00176 1069 CDD SANT 848 892 IPR001005 -
Arst10g00176 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 692 IPR027417 -
Arst10g00176 1069 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 371 IPR014001 -
Arst10g00176 1069 FunFam ISWI chromatin-remodeling complex ATPase CHR11 746 844 - -
Arst10g00176 1069 Coils Coil 20 40 - -
Arst10g00176 1069 MobiDBLite consensus disorder prediction 1016 1069 - -
Arst10g00176 1069 MobiDBLite consensus disorder prediction 81 96 - -
Arst10g00176 1069 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 499 650 IPR001650 -
Arst10g00176 1069 Gene3D iswi atpase 900 932 - -
Arst10g00176 1069 MobiDBLite consensus disorder prediction 1047 1069 - -
Arst10g00176 1069 Gene3D - 845 899 - -
Arst10g00176 1069 SUPERFAMILY Homeodomain-like 848 898 IPR009057 -
Arst10g00176 1069 Gene3D ISWI, HAND domain 746 844 IPR036306 GO:0003677|GO:0006338|GO:0031491
Arst10g00176 1069 Gene3D - 415 707 IPR027417 -
Arst10g00176 1069 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 845 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00176 Arst-Chr10 1671061 1679204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00176 186 636 RAD5 or RAD16-like Gene Family AT1G02670 26.916 7.33e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst10g00176 SNF2_N 5.5e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00176 K11654 - gmx:100809750 1886.69