Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00175 ATGAAGAGTTTTTGTTCCATGGCGAGGCCTTCGAAGCCGCAAGTTTCTTCCGACGAAGCTATCTCTAGCGGTTCGAGCTCCGAGGAGGAGGAGCAGGTCAACCAGCAGATCAATGAAGAGGACGAGGAGGAGCTTGAGGCGGTGGCTCGTCAAGCTAGCTCCGACGACGACGACGACGAAGCCGGAAATGATAATTCGCACGATGACGACGAAGATCCTGCTGCCGCCGGAGATGCTGACGAGGATGAGCAGGGTGAAGATGCTGTTGATCCTGGCAAGCGTGAGAAAGCTAGATTGAAAGAGATGCAGAAAATGAAGAAGCAGAAGATTCAGGAGATATTGGATGCACAAAATGCAGCCATAGATGCCGACATGAACAATAGAGGAAAAGGAAGACTGAAGTATCTCTTACAGCAGACTGAGCTGTTTGCACATTTTGCAAAAGGTGATCAATCTTCATCTCAGAAGGCAAGAGGAAGGGGCCGCCATGCATCAAAAGTGACAGAAGAGGAGGAAGATGAAGAATACCTAAAAGAAGAGGAAGATGGTTTATCAAACACTCGTCTCGTGACACAACCATCATGCATCCAAGGGAAATTGAGGGACTACCAACTTGCTGGGCTAAATTGGCTTATAAGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCTTTGTTGGGTTATTTACATGAGTTCAGAGGAATCAAAGGCCCTCATATGGTTGTTGCTCCCAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGTTTTTGTCCTATTCTACGTGCAGTAAAGTTCCTTGGCAACCCTGAAGAGAGGAGACATATAAGGGAGGAATTACTGGTAGCCGGGAAGTTCGATGTCTGTGTTACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTACATTGCGTCGATTTAGTTGGCGTTACATCATTATCGATGAAGCCCATCGAATTAAGAATGAAAATTCCTTGCTTTCCAAAACAATGAGACTCTACAACACAAATTATCGCCTCCTTATTACCGGCACACCGCTTCAGAACAATCTTCATGAACTCTGGTCTCTGCTCAACTTTCTTCTTCCCGAAATTTTTAGTTCTGCTGAAACCTTTGATGAGTGGTTTCAAATCTCTGGTGAGAATGACCAACAAGAGGTTGTCCAGCAATTACACAAGGTCCTCCGGCCATTTCTTCTTCGTAGGTTGAAGTCCGATGTTGAGAAAGGGTTGCCGCCTAAAAAGGAAACCATTCTTAAAGTAGGTATGTCACAAATGCAGAAACAGTACTATAGAGCGCTTCTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAGCGCCTCCTGAATATAGCTATGCAGCTACGAAAATGTTGCAATCATCCATATCTTTTCCAGGGTGCTGAACCCGGTCCTCCATATACAACAGGGGATCATCTCATTACTAATGCTGGTAAAATGGTTCTCTTGGACAAGTTACTTCCTAAATTGAAGGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGGTATCACTATTGTCGCATAGATGGCAATACTGGTGGAGATGAGCGGGATGCTTCCATTGACACTTTCAACAAACCTGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCTGGAGGTCTTGGAATTAACCTTGCTACTGCTGATGTTGTCATCCTATATGATAGTGACTGGAACCCACAAGTTGACTTGCAAGCCCAGGATCGTGCTCATAGGATAGGTCAAAAGAAAGAAGTCCAAGTTTTTCGCTTTTGCACAGAGTATACAATTGAGGAGAAGGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTAGTGATTCAGCAAGGACGGTTGGCTGAGCAAAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGAGCAGAAATGGTTTTCAGTTCCAAAGATAGCACTATTACAGATGAGGACATTGATAGAATCATTGCTAAAGGAGAGGAAGCAACTGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAATTCAAGATGGATGACACTGCCGAGTTATATGATTTTGATGATGATAAGGATGAGAACAAAGTTGATTTCAAAAAAATTGTGAGTGACAATTGGATTGAACCACCAAAAAGAGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACATTACGACAAGGAGGTCCTGCTAAACCAAAGGAGCCACGAATTCCTAGGATGCCTCAGTTGCACGACTTCCAGTTTTTTAACACACAAAGGCTTAGTGAGTTGTATGAAAAGGAAGTGCGCTACCTAATGCAAACGCATCAAAAGAATCAGATAAAGGATTCAATAGATGTTGATGAACCAGAAGATGTGGGAGATCCATTGACTGCTGAAGAATTGGAAGAAAAGGAGCGCCTTCTAGAGGAGGGATTTTCTTCATGGAGCCGGAGGGATTTTAATACTTTCATCAGGGCTTGCGAAAAGTATGGCCGAAATGATATAAAAGGTATTGCTTCTGAGATGGAAGGGAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAGAGGGGGGAGGCTAGAATTTCACGGAAAGATGAAATCATGAAAGCTATTGGGAAGAAGTTGGACCGATACAAGAATCCATGGCTAGAGTTAAAGATACAGTATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGACAGGTTCATGATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTGAAGGCAGCATTTCGAACATCACCCTTGTTTCGTTTTGACTGGTTTGTTAAGTCTCGCACAACACAAGAACTTGCAAGGAGGTGTGACACACTCATTCGCCTGGTAGAAAAGGAAAACCAAGAATATGACGAGAGGGAGAGACAAGCGCGCAAAGAGAAGAAACTTGCAAAGACCATGACCCCATCAAAGCGGACCCTGGCAAGACAGACAGAATCTCCATCTTCTTTGAAGAAGCGCAAGCAATTAACCATGGATGATTATGGAAGTGTGGGAAAAAGGAGAAAATAA 3228 0.4257 MKSFCSMARPSKPQVSSDEAISSGSSSEEEEQVNQQINEEDEEELEAVARQASSDDDDDEAGNDNSHDDDEDPAAAGDADEDEQGEDAVDPGKREKARLKEMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKARGRGRHASKVTEEEEDEEYLKEEEDGLSNTRLVTQPSCIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYHYCRIDGNTGGDERDASIDTFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKVDFKKIVSDNWIEPPKRERKRNYSESEYFKQTLRQGGPAKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEDVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKGIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKTMTPSKRTLARQTESPSSLKKRKQLTMDDYGSVGKRRK 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00175 1075 Pfam SLIDE 908 1018 IPR015195 GO:0003677|GO:0005634|GO:0006338
Arst10g00175 1075 SUPERFAMILY Homeodomain-like 906 1028 IPR009057 -
Arst10g00175 1075 MobiDBLite consensus disorder prediction 148 180 - -
Arst10g00175 1075 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 851 905 - -
Arst10g00175 1075 MobiDBLite consensus disorder prediction 1053 1075 - -
Arst10g00175 1075 FunFam ISWI chromatin-remodeling complex ATPase CHR11 939 1042 - -
Arst10g00175 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 698 IPR027417 -
Arst10g00175 1075 MobiDBLite consensus disorder prediction 1022 1039 - -
Arst10g00175 1075 Gene3D iswi atpase 906 938 - -
Arst10g00175 1075 MobiDBLite consensus disorder prediction 9 32 - -
Arst10g00175 1075 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 377 IPR014001 -
Arst10g00175 1075 Gene3D - 851 905 - -
Arst10g00175 1075 FunFam Chromatin-remodeling complex ATPase 201 416 - -
Arst10g00175 1075 CDD SF2_C_SNF 501 626 - -
Arst10g00175 1075 MobiDBLite consensus disorder prediction 1 102 - -
Arst10g00175 1075 Coils Coil 1072 1075 - -
Arst10g00175 1075 SMART ultradead3 196 388 IPR014001 -
Arst10g00175 1075 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 763 853 IPR036306 GO:0003677|GO:0006338|GO:0031491
Arst10g00175 1075 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 505 656 IPR001650 -
Arst10g00175 1075 Coils Coil 1008 1035 - -
Arst10g00175 1075 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 103 1060 - -
Arst10g00175 1075 Gene3D - 201 416 IPR038718 -
Arst10g00175 1075 FunFam ISWI chromatin-remodeling complex ATPase CHR11 421 713 - -
Arst10g00175 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 415 IPR027417 -
Arst10g00175 1075 Coils Coil 26 46 - -
Arst10g00175 1075 FunFam ISWI chromatin-remodeling complex ATPase CHR11 752 850 - -
Arst10g00175 1075 MobiDBLite consensus disorder prediction 1022 1075 - -
Arst10g00175 1075 MobiDBLite consensus disorder prediction 87 102 - -
Arst10g00175 1075 SMART sant 953 1014 IPR001005 -
Arst10g00175 1075 SMART sant 851 900 IPR001005 -
Arst10g00175 1075 Pfam HAND 764 813 IPR015194 GO:0003677|GO:0006338|GO:0031491
Arst10g00175 1075 Gene3D ISWI, HAND domain 752 850 IPR036306 GO:0003677|GO:0006338|GO:0031491
Arst10g00175 1075 Gene3D - 939 1042 - -
Arst10g00175 1075 Pfam Helicase conserved C-terminal domain 503 615 IPR001650 -
Arst10g00175 1075 Coils Coil 99 119 - -
Arst10g00175 1075 Pfam SNF2-related domain 213 480 IPR000330 GO:0005524|GO:0140658
Arst10g00175 1075 Gene3D - 421 713 IPR027417 -
Arst10g00175 1075 SMART helicmild6 531 615 IPR001650 -
Arst10g00175 1075 ProSiteProfiles SANT domain profile. 850 902 IPR017884 -
Arst10g00175 1075 CDD SANT 854 898 IPR001005 -
Arst10g00175 1075 CDD DEXHc_SMARCA1_SMARCA5 197 417 IPR044754 GO:0005524
Arst10g00175 1075 MobiDBLite consensus disorder prediction 57 86 - -
Arst10g00175 1075 SUPERFAMILY Homeodomain-like 854 904 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00175 Arst-Chr10 1671061 1679497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00175 192 642 RAD5 or RAD16-like Gene Family AT1G02670 26.916 6.53e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst10g00175 SNF2_N 5.5e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00175 K11654 - gmx:100809750 1886.69