LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g00173	ATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGAGGAAAGTGGTGGTGGTGGGTTGAAGAAGGAAGTGGCAAAAAAGGAATCTTTCAAGGAATCGTCAGCTCCTCAGGTTCATCACCCCAGCAGGGTTAGCTCAGATAAATCAAAGTCACGTTGTAGCTCAGATCCTAAGAAGGAAACACCAGTTCCGAAGGATGGGCCAACTGCTCATATTGCTGCTCAAACATTTACATTCCGAGAGCTTGCAGCTGCTACAAAGAATTTTAGGCCAGAATGTTTACTTGGGGAAGGAGGTTTTGGGCGCGTTTACAAGGGTCGGCTTGAGAACACAGGACAGGTAGTTGCTGTAAAGCAACTTGATCGAAATGGTCTTCAAGGGAATCGGGAGTTTTTGGTGGAGGTTCTCATGCTTAGTCTCTTACATCACCCTAATCTGGTGAACTTAATCGGTTATTGTGCTGATGGTGATCAGCGGCTCCTTGTTTATGAATTCATGCCATTGGGATCTTTGGAGGATCATTTACATGCTGAAAATATAATGACCTACAGATTGGCAAGATGCCATAATTCAGCAAATCGTTTTGAAAGTGCATTGTTCAATACAATGTTATTTCACTTAACCAATCTCCCTCCTGACAAGGAGCCTCTGGACTGGAACACTAGGATGAAAATAGCAGCTGGTGCAGCAAAGGGATTGGAATATTTGCATGACAAGGCAAACCCCCCTGTGATATATAGAGACTTAAAATCTTCTAACATCCTGCTAGATGAGGGTTATCATCCCAAGTTATCGGATTTTGGACTAGCTAAACTTGGTCCTGTTGGTGACAAGACACATGTATCCACACGAGTAATGGGAACATATGGTTATTGTGCACCAGAATATGCTATGACTGGTCAACTCACTCTGAAGTCCGATGTTTACAGCTTTGGAGTTGTGTTCCTTGAACTTATTACGGGGCGCAAGGCTATTGACAATACACGTGCACATGGAGAGCATAATCTTGTTGCTTGGGCTCGGCCTCTTTTCAAAGATCGTAGAAAGTTCCCCAAAATGGCTGATCCTCTACTCCAAGGCCGATATCCAATGCGAGGACTGTACCAAGCACTGGCAGTTGCAGCAATGTGCTTGCAGGAACAAGCTGCCACAAGGCCTCTTATTGGGGATGTCGTAACTGCTCTCACATATCTGGCCTCCCAGACATATGAACCAAATGTAGCCAATCAGTCCAACAGACTCGGTCCATCTACCCCCCGGAGCAGGGATGACAGAAGGAGCATGATAGATGGTGTGGATAGCCCAGACCGGGGGCGTCTCGGCTCCCCTTCCACCCACAGAAACTCACCTGATTACAGGAGGAGAGACAATAGGGAACTGAGTGTTGGGACAGAGTTAGGCAGGAGTGTCTCTGGCAGCGGTGGGTCGGGGAGGAAATGGGGACTGGATGATTTAGAAAGGCAAGATTCTCGTAGAGACAGCCCTGTAAATACTGCAAGAGCTAGGGAGACGCCAAGGAACCGTGACCTAGACAGGGAACGCGCTGTTGCAGAAGCGAAAGTATGGGGTGAGAATTGGAGGGAAAAGAAGAGAGCAAATGCCATGGGAAGCTTTGATGCCACAAATGAGTGA	1635	0.4697	MGGCFPCFGSSNKEESGGGGLKKEVAKKESFKESSAPQVHHPSRVSSDKSKSRCSSDPKKETPVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLENTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHAENIMTYRLARCHNSANRFESALFNTMLFHLTNLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYEPNVANQSNRLGPSTPRSRDDRRSMIDGVDSPDRGRLGSPSTHRNSPDYRRRDNRELSVGTELGRSVSGSGGSGRKWGLDDLERQDSRRDSPVNTARARETPRNRDLDRERAVAEAKVWGENWREKKRANAMGSFDATNE	544

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g00173	544	Gene3D	Transferase(Phosphotransferase) domain 1	203	415	-	-
	Arst10g00173	544	Gene3D	Phosphorylase Kinase; domain 1	74	166	-	-
	Arst10g00173	544	Pfam	Protein tyrosine and serine/threonine kinase	95	329	IPR001245	GO:0004672\|GO:0006468
	Arst10g00173	544	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	245	257	IPR008271	GO:0004672\|GO:0006468
	Arst10g00173	544	SMART	serkin_6	90	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g00173	544	MobiDBLite	consensus disorder prediction	419	434	-	-
	Arst10g00173	544	MobiDBLite	consensus disorder prediction	449	463	-	-
	Arst10g00173	544	SUPERFAMILY	Protein kinase-like (PK-like)	76	415	IPR011009	-
	Arst10g00173	544	ProSiteProfiles	Protein kinase domain profile.	90	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g00173	544	MobiDBLite	consensus disorder prediction	408	515	-	-
	Arst10g00173	544	ProSitePatterns	Protein kinases ATP-binding region signature.	96	119	IPR017441	GO:0005524
	Arst10g00173	544	FunFam	Serine/threonine-protein kinase PBS1	63	166	-	-
	Arst10g00173	544	MobiDBLite	consensus disorder prediction	17	35	-	-
	Arst10g00173	544	MobiDBLite	consensus disorder prediction	44	66	-	-
	Arst10g00173	544	MobiDBLite	consensus disorder prediction	481	515	-	-
	Arst10g00173	544	CDD	STKc_IRAK	96	397	-	-
	Arst10g00173	544	MobiDBLite	consensus disorder prediction	1	70	-	-
	Arst10g00173	544	FunFam	Serine/threonine-protein kinase PBS1	201	414	-	-
	Arst10g00173	544	PANTHER	OS07G0668900 PROTEIN	4	408	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g00173	Arst-Chr10	1663059	1669457	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g00173	70	401	Glycoside Hydrolase	AT3G07070	68.072	2.65e-162	466

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Arst10g00173		PK_Tyr_Ser-Thr	1.7e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g00173	-		-	adu:107468111	1069.68