LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g00099	ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCACAAGAAGGGGAAAAGCGAGTTCTGGACTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTTTCTTTACCTGCAGTTGGGAGCCGTGTGGTGTACTTTCCACAAGGTCACAGTGAACAGGTGGCAGTGTCAACTAATAAGGAAGTGGATGCTCATATCCCCAACTACCCAAGCTTGCCACCCCAACTCATTTGTCAACTCCATAATCTTACTATGCATGCTGATGCTGAGACCGATGAAGTGTATGCACAGATGACCTTACAACCTTTGAATCCTCAAGAGCAAAAGGAGGCGTATCTTCCAGCAGAGTTGGGAAGTCCAAGCAAACAGCCAACAAACTACTTCTGCAAGACTTTGACAGCCAGTGACACAAGCACCCATGGAGGATTCTCTGTTCCTCGCCGAGCAGCAGAGAAAGTGTTTCCTCCATTGGATTTCTCTCAACAGCCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGCAATGAATGGAAATTCAGACATATCTTTCGAGGCCAGCCTAAAAGGCATCTACTCACAACTGGATGGAGTGTTTTTGTTGGTGCTAAAAGGCTTGTTGCTGGTGATTCTGTGCTCTTTATCTGGAATGACAAGAACCAGTTGCTTCTTGGCATCCGACGCGCGAATCGACCACAAACTGTGATGCCTTCCTCAGTGTTGTCAAGTGATAGCATGCATTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACCAATAGTCGTTTCACTATTTTCTATAATCCACGTGCTAGTCCATCAGAGTTCGTCATACCTCTGGCAAAGTATGTTAAGGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGTTGTTTGAAACTGAGGAGTCCAGTGTGCGACGATATATGGGCACAATAACTGGCATTAGTGACTTGGATGCTGCTAGATGGCCAAATTCACATTGGCGCTCAGTGAAGGTTGGTTGGGATGAATCCACTGCAGGAGAGAGGCAACCTAGAGTGTCTCTTTGGGAGATTGAGCCATTAACAACATTTCCTATGTATCCATCTCCATTTCCTCTACGCCTTAAACGACCTTGGCCTCCAGGACTACCATCATTCCATGCAGGATTGAAGGATGAAGATTTTGGTATGAGTTCTCCACTGATGTGGCTGCGAGATGCGGACAGGGGTGGTCTTCAGTCTCTAAATTTTCAGGGGATTGGAGTTAGTCCTTGGATGCAGCCGAGGTTTGATCCATCCATGCTGAATATGCAAACAGACATGTATCAAGCTGTGGCTGCGGCCGCACTTCAGGATCCTTCTAAACAGCATCCTTCTTCCTTACTTCAATTTCAGCAGCCACAGAACTTCCCAAACAGGACTGCTGCTTTAATGCATTCACAGATATTGCAGCAATCACCACCTCAGCAAGCTTTCCAAATTGATCAAGAGAATCAGTCACAAACTCCAACACATGTTCAACTGCGTCCACAGCACCAGAACTCATTCAATAACCAGCTTCACCATTACAACAACCAGCAACAGCAACAGCAACCACAGCAGATTTCCAATGCAGTGTCTACAATGTCTCAGTTTGTTTCAAGTTCAGCAACTCAGCCTCTCTCACCACCTGTGCAAGCTATCTCTTCCTTGTGCCAACAGCAAAGCTTTTCAGATTCAAATGGAAACCCTGTCACCACTGCTAATGTTTCTCCTCTGCATAGTATCTTGGGGTCCTTTCCCCAGGATGAAGCCTCTCAGCTTCTGAACCTCCCTAGAAGTAGCTCTTGGATTCCTGTTCAAACATCATCAGCAGCATGGCCGTCGAAGCGAGTTGCAGTGGATCCTCTCCTTTCTTCCGGTGCATCTCAGTGCATTCTGCCTCAGGTGGAGCTGCAGAGTAGTATTTCTCAAAATGCAGTTACATTACCACCCTTTCCTGGGAGGGAGTGCTCAATAGACCAAGAAGGAAGCACTGATCCACACAACCATCTTTTATTTGGTGTTAACATAGAGCCTTCAACACTTCTTGTGCATAGCCATGGTGACTCTCCCACCATTCCCTTTCAAACTTCTAACTACATGAGTACTGCAGGTGCCGATTCTTCAGGCTTCCTGCATCCCTCAGAAAATATGCCCAACAAAACCTTCGTGAAGGTTTATAAGTCAGGGTCCTTCGGAAGATCACTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGCAGTGAACTAGCTCGCATGTTCGGCCTAGAAGGCGAGCTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTAGACCGCGAGAACGACGTTCTTCTCCTCGGCGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATCAAGATACTATCACCGCAAGAAGTGCAGCAAATGGGAAACTCCGGCCTCGAGCTCTTGAACTCAGTTCCGGTCCAAAGGCTCTCTAACAGTATCTGCGATGACTACGGGAGCCGAGACTCCAGAAGTTTAAGCACCGGGATAACCACGGTGGGATCATTAGACTACTGA	2577	0.475	MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGSPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVGAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHAGLKDEDFGMSSPLMWLRDADRGGLQSLNFQGIGVSPWMQPRFDPSMLNMQTDMYQAVAAAALQDPSKQHPSSLLQFQQPQNFPNRTAALMHSQILQQSPPQQAFQIDQENQSQTPTHVQLRPQHQNSFNNQLHHYNNQQQQQQPQQISNAVSTMSQFVSSSATQPLSPPVQAISSLCQQQSFSDSNGNPVTTANVSPLHSILGSFPQDEASQLLNLPRSSSWIPVQTSSAAWPSKRVAVDPLLSSGASQCILPQVELQSSISQNAVTLPPFPGRECSIDQEGSTDPHNHLLFGVNIEPSTLLVHSHGDSPTIPFQTSNYMSTAGADSSGFLHPSENMPNKTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNSGLELLNSVPVQRLSNSICDDYGSRDSRSLSTGITTVGSLDY	858

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g00099	858	ProSiteProfiles	B3 DNA-binding domain profile.	127	229	IPR003340	GO:0003677
	Arst10g00099	858	Pfam	Auxin response factor	253	336	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
	Arst10g00099	858	Gene3D	-	722	815	-	-
	Arst10g00099	858	FunFam	Auxin response factor	721	815	-	-
	Arst10g00099	858	SMART	B3_2	127	229	IPR003340	GO:0003677
	Arst10g00099	858	Gene3D	-	291	363	-	-
	Arst10g00099	858	Gene3D	-	125	228	IPR015300	-
	Arst10g00099	858	Pfam	AUX/IAA family	723	811	IPR033389	-
	Arst10g00099	858	MobiDBLite	consensus disorder prediction	483	505	-	-
	Arst10g00099	858	SUPERFAMILY	DNA-binding pseudobarrel domain	112	256	IPR015300	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g00099	Arst-Chr10	1084594	1090203	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g00099	1	480	B3 DNA Binding Superfamily	AT1G30330	85.685	0.0	829

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Arst10g00099		AUX_IAA	3.4e-07	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g00099	-		-	gmx:100798719	1425.22

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