Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00065 ATGGCTTTTCCAGGAGCAAATGAATCCATGTCAGGAGCAAGTTCACCACAGAGAAAGATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAGAACACTACAAATCGCCAAGTAACCTTTTGCAAGCGCAGAAATGGTCTTCTCAAGAAAGCTTATGAGTTATCTGTGCTTTGTGATGCTGAGGTTGCTCTTATAGTTTTCTCCAGCCGTGGTCGTCTTTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGATAGGTATAAGAAAGCATGTTCAGATTCATCTGGTGCTGGATCTGCTTCCGAGATTAATGCTCAGTATTACCAGCAAGAAGCAGAAAAACTGCGTGCCCAAATTAGTAACCTGCAGAATAACAACAGGCAAATTCTAGGTGAGTCATTGAGCAGTATGAATGTGAGGGACCTCAAAAACCTGGAGAATAAATTAGAGAAAGGAATCAGCAAGATTCGTTCCAAAAAGAACGAGCTGCTGTTTGCTGAAATTGAATACATGCAAAAGAGGGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCTAAGATAGCAGAAAGTGAGAGGAACAACATGAGTGTGTTGCCAACTACTGGACCCACAAACTATGAATCAATGCATCAATCTCATGAACAACATCAGCATCAGCATCAGCATCAGCAGCAGCAATTTGATTCTCGTGGCTACTTTCAAGTCACTGGCTTACAACCCAATAGTCAGTATGCACGCCAAGACCAAATGTCCCTTCAATTAGTCTAA 777 0.417 MAFPGANESMSGASSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKACSDSSGAGSASEINAQYYQQEAEKLRAQISNLQNNNRQILGESLSSMNVRDLKNLENKLEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNNMSVLPTTGPTNYESMHQSHEQHQHQHQHQQQQFDSRGYFQVTGLQPNSQYARQDQMSLQLV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00065 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Arst10g00065 258 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Arst10g00065 258 CDD MADS_MEF2_like 21 90 IPR033896 GO:0000977|GO:0045944
Arst10g00065 258 FunFam agamous-like MADS-box protein AGL11 32 115 - -
Arst10g00065 258 MobiDBLite consensus disorder prediction 206 230 - -
Arst10g00065 258 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 227 - -
Arst10g00065 258 Gene3D - 32 98 IPR036879 GO:0003677|GO:0046983
Arst10g00065 258 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Arst10g00065 258 Pfam K-box region 105 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst10g00065 258 MobiDBLite consensus disorder prediction 1 26 - -
Arst10g00065 258 Coils Coil 143 163 - -
Arst10g00065 258 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Arst10g00065 258 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Arst10g00065 258 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Arst10g00065 258 Coils Coil 106 133 - -
Arst10g00065 258 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Arst10g00065 258 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst10g00065 258 SUPERFAMILY SRF-like 21 92 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00065 Arst-Chr10 860100 867600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00065 1 258 MADS-box Gene Family AT3G58780 62.921 5.08e-109 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst10g00065 K-box 3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00065 K09264 - gmx:732595 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g00065 10 860100 867600 Arst10g00065 10 860100 867600 ECH
Arst3g06196 3 134958655 134962531 Arst10g00065 10 860100 867600 PCT