Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00039 ATGCAGATGGTAGCAGAGGCAGTGGGAACGTTCTTCTTGATATTTGCAGGGTGTGGTTCATTGGTTATGAACCTCAACAACGACAAGGTGGTGACACTTGCAGGAATCGCAACAGTTTGGGGGCTGCTTGTGATGGTGTTAATATACTCTCTTGGACACATATCTGGTGCTCATTTCAACCCTGCAGTTACCATTGCTCTTGCTTCCATAAACAGGTTCCCTTGGAACCAGGTTCCTGCTTATATCTTCTCTCAAGTCCTTGGATCCACACTTGCAAGTGGTGCTCTCAGACTCTTATTTACGGGCAAGGATAACCAGTTTCCCGGAACCGTTCCATCTGTGACTCACGTTCAAGCTCTCGTTATTGAATTCATAATCACTTTCTTTCTCATGTTCGTCATTTCTGGGGTGGCCACTGATAACCGAGCGATTGGTGAATTGGCTGGACTTGCAGTTGGATCTACTATTCTACTAAATGTGCTCGTTGCAGGGCCATTAACGGGAGCATCAATGAACCCTGCAAGATCATTGGGACCAGCTATTGTGCACAGTGAATACAGAGGAATATGGGTGTATTTGGTGTCACCCATTGTTGGAGCTGTGGCTGGTGCATGGACCTACAATTTCGTTAGGTACACAAAGAAGCCGGTTCGTGAGATCATCAAGAGTGCCTCTTTCTTCAAGGGGAGTAAATAG 696 0.4626 MQMVAEAVGTFFLIFAGCGSLVMNLNNDKVVTLAGIATVWGLLVMVLIYSLGHISGAHFNPAVTIALASINRFPWNQVPAYIFSQVLGSTLASGALRLLFTGKDNQFPGTVPSVTHVQALVIEFIITFFLMFVISGVATDNRAIGELAGLAVGSTILLNVLVAGPLTGASMNPARSLGPAIVHSEYRGIWVYLVSPIVGAVAGAWTYNFVRYTKKPVREIIKSASFFKGSK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00039 231 Pfam Major intrinsic protein 2 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst10g00039 231 SUPERFAMILY Aquaporin-like 2 220 IPR023271 -
Arst10g00039 231 CDD MIP 4 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst10g00039 231 NCBIfam MIP family channel protein 5 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst10g00039 231 Gene3D Glycerol uptake facilitator protein. 1 220 IPR023271 -
Arst10g00039 231 ProSitePatterns MIP family signature. 58 66 IPR022357 -
Arst10g00039 231 PANTHER AQUAPORIN NIP2-1 2 226 IPR034294 -
Arst10g00039 231 PRINTS Major intrinsic protein family signature 190 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst10g00039 231 PRINTS Major intrinsic protein family signature 77 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst10g00039 231 PRINTS Major intrinsic protein family signature 40 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst10g00039 231 PRINTS Major intrinsic protein family signature 122 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst10g00039 231 PRINTS Major intrinsic protein family signature 153 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst10g00039 231 PRINTS Major intrinsic protein family signature 1 20 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00039 Arst-Chr10 711496 712790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00039 2 228 Major Intrinsic Protein MIP AT5G37820 61.674 1.26e-98 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00039 K09874 - gmx:100812577 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g06185 3 134894838 134896470 Arst10g00039 10 711496 712790 PCT