Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00033 ATGGATGAAGTTCAGGGAAGTTCAAGTTCCTTACCTCCATTTCTCACAAAGACATATGAGATGGTGGATGATCCTTCCACCAATTCCATTGTATCATGGAGTGACAGCAGCAGGAGTTTTGTTGTTTGGAATCCACCAGAGTTTGCAAGGGTCTTGTTACCAAAATTCTTTAAGCACAATAACTTCTCAAGCTTTATCAGACAGCTCAACACTTATGGCTTTAAGAAGATTGACCCTGAACAATGGGAATTTTCCAATGATGATTTTGTAAGAGGTCAACCAAATCTTATGAAGAATATTCATAGGCGCAAACCGGTTCATAGCCATTCTTTGCAGACTCTACATGGACAAGTGGCTATTCCACTAACCGAGTCAGAACGGAAGAGTCTGAAAGATGAGATTGAAAAGCTTAAGCATGATAAACAACAACAGATTCTGGAGTTACAGAGACAAGAACAAGAGTGGGAAAATTTTAAGTTAAAAATAGATTGCACAAAGGAGCGTTTGGAAACAATGGAAAAGAGGCAACAAAATATGATTTCTTCTATTTCTCAAGTGCTGCATAAACCTGGAGCTGCATTAAATCTGTTGACACTGACAGAAAACATGGAAAGAAAACGAAGGTTGCCAAAAGGCAGCAGTCACTTTACTGATGAAGCTACTAGCATTGAAGATCCTATGGAAATATCCCAAGTGTTACCTAGTGAAAATGCAGAGAGTAGTGACTTCGTCACATCATGCATAGAACGAATGAATCAGCTCGAGTCAACCCTGGTATTTTGGGAATATATTGCACAAGATGTGAATGAAACCCTTGTTCAAAGTCATTCAAACTTGGATGTTGATGAATCCACAAGTTGTCCAGACAGTCCAGCACTATCTAGTGTGCAACTCGATGATGAAGTTCAGCCTAAGTCATCCGGGATAGACATGAATTCTGAGCCAGCTTTACCTTCTGATACTGTTGCATTGAAGGAACAACCTGTTGGAACTACCCCTGCAGCTACTGGTGTTAACGACAAATTCTGGGAACAATTCTTGACAGAGAATCCTGGTTCAACAGAACTGCAAGAGGCACAATCAGAAAGAATGGATTCGGACAACAGAAAGAATGAAGGAAAGCCTAGTGCACATGGCAAGTTTTGGTGGAACATGAGGAATGTAAATAATCTTCCAGAACAGATGGGTCATTCTTAG 1197 0.4027 MDEVQGSSSSLPPFLTKTYEMVDDPSTNSIVSWSDSSRSFVVWNPPEFARVLLPKFFKHNNFSSFIRQLNTYGFKKIDPEQWEFSNDDFVRGQPNLMKNIHRRKPVHSHSLQTLHGQVAIPLTESERKSLKDEIEKLKHDKQQQILELQRQEQEWENFKLKIDCTKERLETMEKRQQNMISSISQVLHKPGAALNLLTLTENMERKRRLPKGSSHFTDEATSIEDPMEISQVLPSENAESSDFVTSCIERMNQLESTLVFWEYIAQDVNETLVQSHSNLDVDESTSCPDSPALSSVQLDDEVQPKSSGIDMNSEPALPSDTVALKEQPVGTTPAATGVNDKFWEQFLTENPGSTELQEAQSERMDSDNRKNEGKPSAHGKFWWNMRNVNNLPEQMGHS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00033 398 Gene3D - 6 104 IPR036388 -
Arst10g00033 398 FunFam Heat shock transcription factor 1 7 104 - -
Arst10g00033 398 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Arst10g00033 398 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst10g00033 398 MobiDBLite consensus disorder prediction 360 376 - -
Arst10g00033 398 MobiDBLite consensus disorder prediction 280 316 - -
Arst10g00033 398 Coils Coil 120 168 - -
Arst10g00033 398 MobiDBLite consensus disorder prediction 280 314 - -
Arst10g00033 398 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst10g00033 398 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst10g00033 398 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst10g00033 398 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst10g00033 398 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 296 IPR027725 -
Arst10g00033 398 MobiDBLite consensus disorder prediction 350 381 - -
Arst10g00033 398 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00033 Arst-Chr10 684689 686750 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00033 7 397 HSF AT4G18880 52.868 6.70e-119 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Arst10g00033 HSF_DNA-bind 2.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00033 K09419 - gmx:100820566 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g00033 10 684689 686750 Arst10g00033 10 684689 686750 ECH
Arst10g00033 10 684689 686750 Arst3g06181 3 134845848 134848137 ECH
Arst3g06181 3 134845848 134848137 Arst10g00033 10 684689 686750 PCT