Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00027 ATGACTAGGGCTGTCCGCAATAGGGTACTCAAGGATGCCAATGGTGATGTCAGTGATCATCTACGCAATCACATACATTTAACAAATTGCATTCACTTGAAGAACCACATGCACAAGAACAGCCCTATCCTGGCTGATAGGTCCCTCATGAGGGACCTTGTTGTGCTTCAGAGGTCACGTTCCCTCAGGGACCCTTCGGCCAGCCCTCAATCATGGAACTCACCTTCTGTGGTTGATATGCTTTTCAAAAAGGTTGAAAATGATGTCATGCTTCATGGAGGAAGAAGGTCTGTGGGCGGGGAGCGCAGGAAGGAAGGGAGGAGGTTGTCCGGAACCTCGCCGCCCTTGGTGAGCATAGGTACATCAAGAGTTGCTCCAGGTGATGCTAGTAGAGGCAATGATGGGGTGCCAGCAACTAGTGAGCGAAGTAGCAAGAGTGGAATTGGGGATGGGAAGAGAGTTGGGAGAGAAGAATCTGGTAGAAAGAGTGATAGGCCTGATTATGTGGATGTTAGTCAAGAACAGCATCTAAGTCAAGCTGCCAAAACTTTGTCTGAAGATGTTGCTTCAAGGCACTCTGAATCTAAAGGGAGAAAGAAACATAAAGGGAAAAATGTTCGAGATGTTCAAGTTAAGACCCTTTCTGAACAGCTTAATGATATTCCATTGGATAGTGATGATTTAGCATCATCAAACATTCATTTTCGTGGAAGGTTTCCTAGACAAGAGAAAATCATTGAGGAGGCAGAAGCCAGTGTGCGTGGTCATGGAAGTCGGGTAAAGAGGCGTAAATTTCGAAGTGCAAGAAGAGCTCGTGTGGCTACAGCATCAAGAGATACTGGTGCTGAGAATGAATTATCTGTGGCCTCCAACTCATTAGCTCATGGTTCATCCCACCAGAGATATCACTCAGAGGAGGCTGATGAGTTCCTAGATGGAAATGTTACTAGAGCTCCAAAAAATGGTTGTGGTATTCCATGGAATTGGTCCAGGATTCATCATAGAGGTAAAACATTCCTTGACATGGCAGGGAGAAGTTTTACTTGTGGTTTATCTGACTCAAGATTAAGGAAAGGGTTAAATGGCAATGGAAGAAATATTTCTGAAATGCCTGTGGCATCTGAGAACTCAGGTTCATCTACTAAATCTGATGCAGAAGCAATGCCTTTATTACTTGATGCATCTGGGAGCACTGAAAATGCGTGTTGGTCCCATGACTATTCCGGGGAACTTGGTCTTTTTGGTGATAACTTGTTCAACCGTGATATTGATTCTGACCTTGCTTCTGAAGCTAGATCTGGTGACCAACATAAGTTGAGAGGGAATGGTCATGGTAGACATCAAAGCTTAACACAAAAGTATATGCCGCGAACCTTCAGAGATATGGTTGGACAGAGTTTAGTGGCACAAGCTCTTTCGAATGCAGTAATGAGGAGAAAAGTTGGGTTGTTGTATGTGTTTTATGGTCCCCATGGCACCGGAAAAACTTCCTGTGCCCGCATATTTGCCAGAGCATTGAATTGTAACTCTTCAGAACACCCGAAACCTTGTGGCTTTTGCAATTATTGCATGGCACATGATATGGGCAAGAGTAGAAATATAAGGGAAGTTGGCCCAGTCAGTAATTTTGACTTCGAGAGCATCATGGATCTTCTTGACCATATGATTGTATCCCAGCTCCCATCACAGTACAGAGTGTTCATTTTTGATGACTGTGATACTTTATCAGTGGATTGTTGGAATGCCATATCAAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCCTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTTCCAAAGCTGAAGGATGGAGATATTATATATACATTGCAGTTGATTGCAACCAAGGAAGGTCTAGATATTGATAAGGATGCCTTGAAACTCATTGCATCAAGATCTGATGGATCGTTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCTGTTCCTCTTGTTCAGGAACTGGTAGGGCTTATCTCTGATGAGAAATTGATTGATCTACTTGATTTGGCATTATCTGCTGACACAGTCAATACTGTGAAGAATTTGAGGGTGATCATGGAAACTGGTGTTGAGCCATTAGCTTTAATGTCACAGCTCGCCACAGTAATAACTGATATACTTGCTGGGACCTATGACTTCACAAAAGAAAGGCGAAGAAGAAAGTTCTTCCGGAGACAGCCGTTGTCTAAAGAAGACATGGAAAAGCTTCGCCAAGCACTAAAAACATTATCTGAGGCTGAAAAGCAGTTGAGGATGTCCAATGATAAGCTTACGTGGTTGACAGCTGCATTGCTTCAACTTGCTCCTGACCAACAATATGTGATGCCTACTTCATCTGATAATAGCTTCAACCATAGTCCCCTAGCTCTAAACAATTCTGGTGTGAGAGAAGCAACCAGAATAAATGGAAACCCTGTTGAAATTTCCAGCAAAGCAAGACAATTATCAGTAGATTCTAGATTAGAAAACTTCCATGCGGGACACTCAGCTAATGGTATGACAAAGGATCCTAGTACAGAGAAAAGAAGACTCAGTGTGTCTGGTTCTGCCACTCAACAAACTTATTCCCATATGGCCAACAAGAGTAGAATGAATGAAAGGCAGATATTGAATAAAAACCATAAAGGTATTGAAGAGATGTGGTTAGAGGTTCTTGAGAGGATTCAAGTTACTGGACTGAGAGAATTTTTGTATAAAGAAGGCAAGCTGATCTCTGTCAATTTTGGAGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCAAATGACCAAATCCACGGCTGAGAAGTTCACAGGTCACATTTTACAAGCATTTGAATCTGTCCTCGGAACATCCGTAACGATAGAAATTAGATGCGAGTCAACTAGAGATGCGGGCTCAGCTGTTCAACTTCCTCTTACATTGCCTGCTACCGATGATAGTTCGTCACAAATTAGAGAATTAAGTGGTGTCGGTGTTGCTCGAGCTCATCCAAGGGGTGAAATCATAGAAGAAGCAGCCTCTCCAGCAGAGCACAAGAATGATGCACAGCAAGTTGATGCTCATGCAACATCTTACAGAAGTGTAGAAGGTTCAAGTATAGGGCAAGCATCAGCTTCCCAAAGAAATCCAATAGTTAAGTCTCACTTGGACCGCAGAAAGCTTAGGGAACAAGGTCAAAGTAAAAGCATTGTAAAAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAGGCGGAAAGCCAGCGAAGTGGGTGGTCGAAACGCAAAGCAGTTTCCATTGCTGAAAAGCTTGAACTAGAGAATCTGAAACTGGAACCAAGATCAAGGAGCTTACTTTGCTGGAAAGCATCAAGAGCAACCCGTCAGAAGCTGTCCCGCTTGAAAATTCGAACCCGAAAACCAAGAGCATTGCTGAAGTTAGTCTCATGTGGGAGATGTCTCTCTTCAAAATCTCCAAGATAG 3528 0.4294 MTRAVRNRVLKDANGDVSDHLRNHIHLTNCIHLKNHMHKNSPILADRSLMRDLVVLQRSRSLRDPSASPQSWNSPSVVDMLFKKVENDVMLHGGRRSVGGERRKEGRRLSGTSPPLVSIGTSRVAPGDASRGNDGVPATSERSSKSGIGDGKRVGREESGRKSDRPDYVDVSQEQHLSQAAKTLSEDVASRHSESKGRKKHKGKNVRDVQVKTLSEQLNDIPLDSDDLASSNIHFRGRFPRQEKIIEEAEASVRGHGSRVKRRKFRSARRARVATASRDTGAENELSVASNSLAHGSSHQRYHSEEADEFLDGNVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSFTCGLSDSRLRKGLNGNGRNISEMPVASENSGSSTKSDAEAMPLLLDASGSTENACWSHDYSGELGLFGDNLFNRDIDSDLASEARSGDQHKLRGNGHGRHQSLTQKYMPRTFRDMVGQSLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCMAHDMGKSRNIREVGPVSNFDFESIMDLLDHMIVSQLPSQYRVFIFDDCDTLSVDCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDGDIIYTLQLIATKEGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLIDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVMPTSSDNSFNHSPLALNNSGVREATRINGNPVEISSKARQLSVDSRLENFHAGHSANGMTKDPSTEKRRLSVSGSATQQTYSHMANKSRMNERQILNKNHKGIEEMWLEVLERIQVTGLREFLYKEGKLISVNFGAAPTVQLMFSSQMTKSTAEKFTGHILQAFESVLGTSVTIEIRCESTRDAGSAVQLPLTLPATDDSSSQIRELSGVGVARAHPRGEIIEEAASPAEHKNDAQQVDAHATSYRSVEGSSIGQASASQRNPIVKSHLDRRKLREQGQSKSIVKSKVSLAHVIQQAESQRSGWSKRKAVSIAEKLELENLKLEPRSRSLLCWKASRATRQKLSRLKIRTRKPRALLKLVSCGRCLSSKSPR 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00027 1175 FunFam DNA polymerase III subunit gamma/tau 444 621 - -
Arst10g00027 1175 MobiDBLite consensus disorder prediction 367 383 - -
Arst10g00027 1175 NCBIfam DNA polymerase III subunit gamma/tau 448 796 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Arst10g00027 1175 CDD HLD_clamp_pol_III_gamma_tau 622 685 IPR045085 -
Arst10g00027 1175 Gene3D - 625 685 - -
Arst10g00027 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 669 IPR027417 -
Arst10g00027 1175 MobiDBLite consensus disorder prediction 92 208 - -
Arst10g00027 1175 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 451 859 - -
Arst10g00027 1175 ProSiteProfiles IQ motif profile. 242 271 IPR000048 GO:0005515
Arst10g00027 1175 SMART AAA_5 481 622 IPR003593 GO:0016887
Arst10g00027 1175 Coils Coil 758 785 - -
Arst10g00027 1175 MobiDBLite consensus disorder prediction 172 186 - -
Arst10g00027 1175 MobiDBLite consensus disorder prediction 146 171 - -
Arst10g00027 1175 SUPERFAMILY post-AAA+ oligomerization domain-like 693 796 IPR008921 GO:0003677|GO:0006260
Arst10g00027 1175 Gene3D - 441 619 IPR027417 -
Arst10g00027 1175 FunFam DNA polymerase III subunit gamma/tau 623 685 - -
Arst10g00027 1175 MobiDBLite consensus disorder prediction 1041 1067 - -
Arst10g00027 1175 MobiDBLite consensus disorder prediction 92 109 - -
Arst10g00027 1175 MobiDBLite consensus disorder prediction 1027 1070 - -
Arst10g00027 1175 MobiDBLite consensus disorder prediction 271 297 - -
Arst10g00027 1175 MobiDBLite consensus disorder prediction 362 383 - -
Arst10g00027 1175 MobiDBLite consensus disorder prediction 280 297 - -
Arst10g00027 1175 Pfam DNA polymerase III subunits gamma and tau domain III 678 797 IPR022754 GO:0003887
Arst10g00027 1175 Pfam DNA polymerase III, delta subunit 465 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00027 Arst-Chr10 647402 653459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00027 448 746 Core DNA Replication Machinery Family AT1G21690 23.333 3.00e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00027 - - gmx:100809005 1898.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g00027 10 647402 653459 Arst10g00027 10 647402 653459 ECH