Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3243 ATGGATAGGATAGATGAGGCAGATGAAAATAATAAAGCGCAGCATTCTGCGTCTTCAGTTGTTGCTCTAGCAGTCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGGCACTTAATAAGTTTGTTCCTGAGGGAATGATTATCTTCAAGCTGATACATGTCCATGCCACCATAAAAGGAGTTCCAACACCAATGGGAAATATGATCCCTCTTTCACAAGTGCGTAATGATGTAGCAACTGCTTTCAAAAAGGAAGTGGAGTGGCAAACAAATCAAACGCTTCTACCTTTTAAGAGAATGTGTGAGCAAAGAAAGGTGCATGTTGATGTTGTAATGATTGAATCGGATGATGTGGTAACTGCAGTAGCAGAGGAAGTAGCTAAGGGTGCTATAACCAAACTTGTTGTTGGAGCTTCATCCCGTGGCATATTTAAAAGTAAACACAAGGGTATGTCTGCGAAAATCTCAGTATGCACTCCAAGATTTTGTACAGTTTATGCTATTTCAAAGGGGAAATTGTCCATACGGCCATCAGACATGCAGATTGAAGGAAGCACTGTTGATGACGCTAGTGAGACCAGTTTTTCCTCCAACAGCTCATCAAACTACACTTCCTCCTCTCAGACAGAATCTGGCTCAGTTTCATCATATGCTGGTTTACATTCCTCTTCCCTAGCAACACAGCGATTTCAAGCTCTTTCAAGTATAAATCAGTCCCTTATAAGCGCAACTCCTAGTTTAGTTGACACTAACCATTCTAGAGGCCAGTCTCTAGATCTTGGAAGAGAAAATACTGCTACAACAAGTTCTGCTAGAAACTCCGATATTGATAATGCTTTGAGTCGGGCCTCTAGTTGCAAAAGCTTTATTTCAGATACTGAATCTTGGATCAATGATCCAAATTCTGGCAAGGACGTGCAACTAGCAACTACACTTCCATCTCCCAGTAGGCAGGCAAAATTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCCCAGGGACTGCATGCAGTAGCTCAAAGTGAGAACATTGACGCATCCCGAAAGCTAAATGACCTGAGTAAGAGGCGATCAGAAGAAACCATGAAAATGAAGGAGATTATTGTTAAGGAGGAGATGGCAAAAGAACTAGCAAAACAAGAAAGAGAGAAATATCAATCTGCAGCAAGAGAAGCTTCATACTTGAAAGAAAGTGCTGAAAGAGAAGCAGCAGAAAGAAAGGAAACGGAGTTGAAAGTTATTCGTGCTGCCAAAGAGAAAGAAAAGCTGGAGGATGCTCTACGTGGTTCCACGCCTCAGTACCGGAAGTTTACATGGGATGAAATAGTCTCAGCTACTTCATCTTTCTCTGAAGATCAGAGAATTGGAATGGGAGCCTATGGAATAGTGTATAAGTGCAATTTGTATCACACAACTGTTGCTGTTAAAGTTCTCAACACTAATGGAAATCGCAAAAGCAAGCAATTCCAGCAGGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCTGATCATGGATGCCTTGTGTATGAATATATGGAGAATGGTAACTTGGAGGATAGACTAATTAGGAAAAACAATACTGCCCCAATCCCATGGTTTGAAAGGTTCCGAATAGCTTGGGAAGTTGCATCAGCTCTTTCCTTTCTTCACAGTTCAAAACCAGAATCTATCATCCATCGTGACTTGAAACCGGCAAACATCTTGCTCAGTCATAACCTTGTCAGCAAGATTGGTGATATTGGCCTTTCTACAATGCTCCATTCAGATATGTCTACCATGTATAAGGACACAGAACCTGTTGGGACACTATGCTACATAGATCCTGAGTATCAAAGGACTGGGATAATATCTCCAAAATCTGATGTTTATGCTTTTGGAATGGTGATCTTACAGTTATTGACAGCAAAACCAGCAATAGCACTTGCTCATAAGGTTGAAACAGCAGTTGAAGGTGGGAATTTAACAGATATATTGGATCCAGAGGCAGGAACTTGGCCATTTCAAGAGACACTGGAGTTAGCTCAATTAGGACTCAGCTGTGCAGAAATTCGGCGGATTGACCGGCCTGATTTAAATGATCATGTGCTTCCAACACTAGAGAAATTGAAAGAAGTTGCTGATAGGGCCCAACGTTCTGCTTCAATTGTTACTATTAAAACCAAACCTCCTAATCATTTCATTTGTCCAATACTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCGGATGGATATACATATGATCGCAAAGCAATTGAAAAGTGGCTTCAAGAGAATGATAAATCACCAATGACAAACATGGCTTTGCCTCATAAGAATTTGATTCCTAATTACACTCTTTTGTCAGCAATTTTGGAGTGGAAGTCTAGAGAAACATGA 2421 0.4081 MDRIDEADENNKAQHSASSVVALAVKGNKKSKYVVQWALNKFVPEGMIIFKLIHVHATIKGVPTPMGNMIPLSQVRNDVATAFKKEVEWQTNQTLLPFKRMCEQRKVHVDVVMIESDDVVTAVAEEVAKGAITKLVVGASSRGIFKSKHKGMSAKISVCTPRFCTVYAISKGKLSIRPSDMQIEGSTVDDASETSFSSNSSSNYTSSSQTESGSVSSYAGLHSSSLATQRFQALSSINQSLISATPSLVDTNHSRGQSLDLGRENTATTSSARNSDIDNALSRASSCKSFISDTESWINDPNSGKDVQLATTLPSPSRQAKFNLELEKLRIELRHAQGLHAVAQSENIDASRKLNDLSKRRSEETMKMKEIIVKEEMAKELAKQEREKYQSAAREASYLKESAEREAAERKETELKVIRAAKEKEKLEDALRGSTPQYRKFTWDEIVSATSSFSEDQRIGMGAYGIVYKCNLYHTTVAVKVLNTNGNRKSKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGNLEDRLIRKNNTAPIPWFERFRIAWEVASALSFLHSSKPESIIHRDLKPANILLSHNLVSKIGDIGLSTMLHSDMSTMYKDTEPVGTLCYIDPEYQRTGIISPKSDVYAFGMVILQLLTAKPAIALAHKVETAVEGGNLTDILDPEAGTWPFQETLELAQLGLSCAEIRRIDRPDLNDHVLPTLEKLKEVADRAQRSASIVTIKTKPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLQENDKSPMTNMALPHKNLIPNYTLLSAILEWKSRET* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3243 806 CDD RING-Ubox_WDSUB1_like 740 780 - -
Apr9g3243 806 CDD STK_N 20 172 - -
Apr9g3243 806 ProSiteProfiles U-box domain profile. 735 806 IPR003613 GO:0004842|GO:0016567
Apr9g3243 806 SMART serkin_6 453 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g3243 806 Coils Coil 372 406 - -
Apr9g3243 806 Coils Coil 326 346 - -
Apr9g3243 806 Gene3D Phosphorylase Kinase; domain 1 421 525 - -
Apr9g3243 806 Gene3D Transferase(Phosphotransferase) domain 1 526 735 - -
Apr9g3243 806 MobiDBLite consensus disorder prediction 248 274 - -
Apr9g3243 806 Pfam Protein kinase domain 454 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g3243 806 SUPERFAMILY RING/U-box 733 804 - -
Apr9g3243 806 PANTHER OS02G0152300 PROTEIN 17 802 - -
Apr9g3243 806 Pfam U-box domain 737 803 IPR003613 GO:0004842|GO:0016567
Apr9g3243 806 SUPERFAMILY Protein kinase-like (PK-like) 435 707 IPR011009 -
Apr9g3243 806 SMART Ubox_2 739 801 IPR003613 GO:0004842|GO:0016567
Apr9g3243 806 Coils Coil 408 430 - -
Apr9g3243 806 Gene3D HUPs 12 151 IPR014729 -
Apr9g3243 806 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 17 802 - -
Apr9g3243 806 ProSiteProfiles Protein kinase domain profile. 453 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g3243 806 MobiDBLite consensus disorder prediction 180 213 - -
Apr9g3243 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Apr9g3243 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 736 806 IPR013083 -
Apr9g3243 806 ProSitePatterns Protein kinases ATP-binding region signature. 459 480 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3243 Apr-Chr9 39896570 39903919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3243 18 803 U-box Gene Family AT4G25160 52.741 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Apr9g3243 Pkinase 3.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3243 - - gsj:114409387 1336.24