Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3236 ATGGACCTAAAGCCAAATCATACTACTGTCCTTGCTGATACTACTACAGCCTTGAGACGGTCAAGGCTAGGTGTACCTTCTGGTCAGTTACCTTACTCTCCTACAGGGGCTACCTTTCCTCATGGACCCTTGCTGGCAATTCCTAGGAAGAAGACCGGTATTCTTGACGATGTTCGTTCGAGTGGTTGGTTGGATGCCATGAAATCATCTTCTCCTACTCACAATAAAGTATCCAAGGATGTTAGCCATGGGATTGTGTCATCTGATGCTGATGCTGCTTATTTTACCTGGCTGCTGAAGTTTCCGTCAGCACTTGCATCTTTTGAACAAATTACTAACTGTGCAAAAGGGAAGAGAATAGCGTTGTTTCTGGATTACGACGGGACACTTTCACCAATTGTGGACAATCCTGACCGTGCTTTCATGTCAGACAATATGCGTGCTGCTGTTAAAAAAGTGGCAGAATATTTTCCAACCGCTATAATTAGTGGAAGAAGCCGTGACAAGGTATATGAATTTGTTGGAGTAAGTGAGCTCTACTATGCTGGTAGTCATGGGATGGATATTATTGGACCTCTTAGACAATCTGTTTCTGATCATCACCCTGACGGGATTATGTCTGCTGACAAGCAGGGTAATGAAGTTAAGTTATTCCAACCTGCTGCTGAGTTCCTGCCGATGATTGATGAAGTACGTCAGTTGCTCATTGAGTGTACGAAAGACATTAAAGGAGCAACTGTTGAAAACAATAAATTTTGTGTCTCTGTACATTACCGTAATGTAGATGAGGAGAGTTGGGATATTGTGGGGCAACGAGTATATGATGTTCTAAAGGACTATCCACGTTTGCGATTAACACATGGGCGAAAGGTTTTAGAGGTCAGGCCAGTGATTGACTGGGATAAGGGAAAAGCTGTCACATTTTTACTTGAGTCTCTTGAACTTAACGATGGTGATGACTTGCTAGCTATATATGTTGGAGATGATCGAACAGATGAAGATGCATTTAAGGTTTTGAGAGAAGTTAATAAAGGTTGTGGCATCTTAGTGTCCCCCGCACCAAGGGAAAGCAATGCAATTTATTCTCTTCGTGACCCCTCAGAGGTCATGGAGTTTCTCACGTCTCTTGCAGTTTGGAAATCAAGCATTCAAGCTCGGTGA 1161 0.4298 MDLKPNHTTVLADTTTALRRSRLGVPSGQLPYSPTGATFPHGPLLAIPRKKTGILDDVRSSGWLDAMKSSSPTHNKVSKDVSHGIVSSDADAAYFTWLLKFPSALASFEQITNCAKGKRIALFLDYDGTLSPIVDNPDRAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYEFVGVSELYYAGSHGMDIIGPLRQSVSDHHPDGIMSADKQGNEVKLFQPAAEFLPMIDEVRQLLIECTKDIKGATVENNKFCVSVHYRNVDEESWDIVGQRVYDVLKDYPRLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLELNDGDDLLAIYVGDDRTDEDAFKVLREVNKGCGILVSPAPRESNAIYSLRDPSEVMEFLTSLAVWKSSIQAR* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3236 386 Pfam Trehalose-phosphatase 123 367 IPR003337 GO:0003824|GO:0005992
Apr9g3236 386 CDD HAD_TPP 121 371 - -
Apr9g3236 386 TIGRFAM T6PP: trehalose-phosphatase 117 377 IPR003337 GO:0003824|GO:0005992
Apr9g3236 386 Gene3D - 120 211 IPR023214 -
Apr9g3236 386 Gene3D - 217 385 IPR023214 -
Apr9g3236 386 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 386 IPR044651 GO:0004805|GO:0005992
Apr9g3236 386 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 386 - -
Apr9g3236 386 SUPERFAMILY HAD-like 121 378 IPR036412 -
Apr9g3236 386 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 122 340 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3236 Apr-Chr9 39751349 39755903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3236 116 377 Trehalose Biosynthesis Gene Families AT1G70290 25.448 1.23e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3236 K01087 - gmx:100783008 656.751