Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3231 ATGGAAACCCTTCGAAAAACATTCCTCACACTCTCGTTGTTATCTTCAATTTTCTCAATAGCCTCATCAAGGAGTGCACCAGCTTCATCCAGCAACATAGAGTGGTGGTGCAAATTAACTCCACACCCTATGCCATGCAAACACTACATTAGTACTCAAATAATGACGAAGCACCATTTCAAAATCAAGCACAAAATTGAGTTCCGGGGAATGCTTGTTCAACTGGCCTTAGACCAAGCCCTAATCATGCAGAAAGAAGCAAATGACTCTGACCAAAACAACATGTCCACAAAGAATCATAGAACAGTTCATGGTGATTGTTTGAAGCTCTATGAAAAAACCATCTTCCACCTCAACCGCACCCTTGAATGCTTGCATGTGAAGCCAAACTGTTCACCAGATGATACACAAACATGGCTCAGTGCTGCTCTCACAAACATTCAAACGTGTGAAACTGGCACTGTTGATCTTGGTGTTCAAGACTTGAAGGTTCCCATTGTGAGCAACAATGTTACTGAGATGATAAGAAACAGCTTAGCCATCAACATGGATTTTCTGAAACAACACAAAGCAGCTCAAAGTTATGATCATCATAACAATCACACCGCAGAAAAAACACAAGAGAATGTGTTTCCAAGTTGGTTTTCAACGCATGAGAGGAAACTGTTGCAGTCTTCATCGGTGAAAGCGCAACTTGTAGTGGCAAAGGATGGTTCGGGGAATTTCAGGACTGTGCAAGATGCTCTCAACGCTGCTGCTAAGAGAAGAACCATGACGAGGTTTGTGATATATGTGAAAAAAGGGGTTTATAGAGAGAACATTGAGGTTGCTGTGAACAATGATAACATCATGCTGATTGGTGATGGAATGAGAAATACTATAATAACCAGTGGCAGAAGTGTTCAAGATGGTTATACCACTTACAGCTCTGCAACCGCAGGCATAGATGGCCTTCACTTCATTGCCCGGGACATCACCTTCCAAAACACCGCCGGTCCTCACAAGGGTCAAGCGGTGGCGCTCCGGTCGGCCTCGGATCTCTCGGTGTTCTTCCGATGCATCATCGCCGGCTACCAAGACACCCTGATGGCTCACGCGCAGCGCCAATTTTACCGGCAATGCTACATCTACGGCACGGTGGACTTCATCTTTGGCAATGCTGCGGTGGTTTTCCAAAATTGCTACATTTTTGCAAGAAGGCCCTTAGATGGCCAAGCAAACATGATCACGGCCCAAGGTCGAGGTGACCCATTTCAAAACTCTGGAATTTCGATCCATGACTCTCAAATACGGGCAGCACCAGACCTCAGGCCCGTTGTTAACCAATACAACACATTCTTGGGTAGGCCATGGCAACAATACTCTAGAGTTGTGGTCATGAAGACATTCATGGACACCTTGGTGAGCCCATTGGGTTGGTCACCGTGGGGTAATTCTAACTTTGCCCAAGACACACTTTATTATGGGGAGTATCAAAATTATGGGCCTGGAGCTTCTACAACTAATAGAGTAAAATGGCCCGGTTTTCATGTGATTACAAGCCCAGCTGAAGCATCCCAGTTTACAGTCTCTCGTCTCCTTGCAGGCCCAACATGGTTGCCTTCTACAACCGTGCCATTTACCTCTGGTCTCTGA 1635 0.455 METLRKTFLTLSLLSSIFSIASSRSAPASSSNIEWWCKLTPHPMPCKHYISTQIMTKHHFKIKHKIEFRGMLVQLALDQALIMQKEANDSDQNNMSTKNHRTVHGDCLKLYEKTIFHLNRTLECLHVKPNCSPDDTQTWLSAALTNIQTCETGTVDLGVQDLKVPIVSNNVTEMIRNSLAINMDFLKQHKAAQSYDHHNNHTAEKTQENVFPSWFSTHERKLLQSSSVKAQLVVAKDGSGNFRTVQDALNAAAKRRTMTRFVIYVKKGVYRENIEVAVNNDNIMLIGDGMRNTIITSGRSVQDGYTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFFRCIIAGYQDTLMAHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCYIFARRPLDGQANMITAQGRGDPFQNSGISIHDSQIRAAPDLRPVVNQYNTFLGRPWQQYSRVVVMKTFMDTLVSPLGWSPWGNSNFAQDTLYYGEYQNYGPGASTTNRVKWPGFHVITSPAEASQFTVSRLLAGPTWLPSTTVPFTSGL* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3231 544 Pfam Plant invertase/pectin methylesterase inhibitor 32 181 IPR006501 GO:0004857
Apr9g3231 544 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 185 IPR035513 -
Apr9g3231 544 Pfam Pectinesterase 232 529 IPR000070 GO:0030599|GO:0042545
Apr9g3231 544 ProSitePatterns Pectinesterase signature 1. 257 276 IPR018040 -
Apr9g3231 544 SMART PMEI_2 28 181 IPR006501 GO:0004857
Apr9g3231 544 PANTHER PECTINESTERASE 1 543 - -
Apr9g3231 544 Gene3D - 225 544 IPR012334 -
Apr9g3231 544 SUPERFAMILY Pectin lyase-like 227 543 IPR011050 -
Apr9g3231 544 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 182 IPR035513 -
Apr9g3231 544 PANTHER PECTINESTERASE 1 543 - -
Apr9g3231 544 ProSitePatterns Pectinesterase signature 2. 376 385 IPR033131 -
Apr9g3231 544 CDD PMEI-like_3 35 182 - -
Apr9g3231 544 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 182 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3231 Apr-Chr9 39688256 39690549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3231 26 544 Carbohydrate Esterase AT5G51500 56.464 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3231 K01051 - gmx:100806133 871.307