Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3221 ATGGTGCTGAACGAGAGACCCACCAAGCGGATTAAAAGAGGAGCAACCGCTGATCTTCATGACTTTTTTTCTTTTCCGGTTGCCGGAGATTCCACCGGCGAACCTTTCCGGTTCAGCGTTCTCCGCTTCCTCTCTAGCCACGCGCGCGTCACCTTCCCTCCCTCGCTCTTTCCCTCCCTGATGACGTGGCAGATCTCGTTCCGTGTCGGATCTCTTGATGGAGAACCGGATTTGTCACCGGTGACGATCGCCGTCGACATCGTCGAGGAAGAAGTGACTCGGTCTCGAAGCCCGGTCTACTGCGACCAGTGCCGAGTCGTTGGATGGAGTGGGCATCCAGTGTGTCGCAAGCGGTACCATTTCATAATAAGGGCTGATTCAAGCAATGCTTCTGAACCTTATCAACGATCATGTTCAAAATGTGCTAATCTTATTCAATTTTCTGAACCAAGGTGTAATTGGTGTGACTCTGCAATTACCGTTGATGATATAGAGGATTGGGTGTATGATAATACCCATCTTTTACATGGGGTTGTTCACTCCAATGGTTATGGTCATCTACTTACACTAAATGGAAGAGAAGGTGGTTCAAAGTTTCTATCTGGATCTGATATCATGGGATTCTGGGATAGGCTTTGTGGCGCTCTCTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAGTTTGGGTTGGAATATCGTTTGCTTCATGCAATCACTGAAGGGTACTCTTGGTATGGCAATTGGGGTTACGAGTTTGGTGCTGGCAGCTATGCTCTTACACAAGATGTTTACAGAAAAGCAGTGAATGCCCTGTCAACTATGCCCTTGTCCTCTTTCTTGTTCCTCGGTCGGGGGCCTCGAACCCGCCTTCAGTGTGTCATTTCTCTTTACCAGTCTTTGGCAGATACTGGACTTGTGACAATTAAAGATCTTTTCTCTTTTATGCTGGCATTGATTCACAAATGCCGTAATCCCCTGACCAAAACATCTGAACAGCATGAAGACACTAGCACTGCTAATGTGTTGTGTCCATGGGCGAGTAATGACGTTGAAGATGTGCAACAAACTTTCATCAAGGTGTTACTTGCATCTGGTGCCTATAGTGAGGACAAATGGGTGAGTTGGCGTTTTCTCAAGGGTTCAGTGTGCAAGGGGGCTGCATCTGAGCTTTTAGATTATAGTCTCAAGCACTTTCGAGGGAAATCGGCTTCCAATGGCATGGTAGTTCAATCGCGATGTAATCCCGTTTCTAATGCTGTTGAGTTCAGGCTTGATCAATTGAGTAGTGTGCAAAGTGGATTTGGTGCAATTTCTAGCTATCCATCAGAAGAACAAGTGATATCTGATCTGAGATTTTTATTTTATTCAATTATTCACCCTGACAAAATGGCAAGCAATGGACGTTGGATTGTAAAGAAATCGGTGGTTGATTCAGCAAGAAAGCTCCTAGACTGTAAGCAGTTTATGAAGGATTACAAGCCTGAAAAAGTAGCAGCCGAGCTACCTCCAGCCATTAGGTTGTGGTGTAGTGTGGAGCTTTCTGATCAGCCTAAAGATGATCCATCCCCACCTCCAGAGCTAATTATCTTGCCTCTGAATGCTACTCTTTCGGACCTCATGAGTGAAGTCACTAGTGTTTTTCAAGAAGTATATGTGATGTACAAGAGGTTTCAGGCTGAGAAACTCCTAGAATTTGGATCAGTCAGTGATTCCTACACCTTAAAATTCTTGCTTGGAACAAGTGGATTTGTCCAAATTCAAGGTAAATGCCCAGCCAAACACAGGCTAAACCGTTTCCGAATGGAAAGAGGAACCGAGGCATGGAAAGTTGATTGCCCTTGTGGGGCCAATGATGATGATGGGGAAAGAATGTTGGCATGTGATACCTGTGGTGTTTGGCAACATACCAGATGTGCTGGAATTGATAACTCTGATTCTATTCCCTCGAAGTTTGTGTGCTTGAGATGCCTCAACCTGTATAGGAAGAAAGCCAGAAAACTGCCAGACCTTGATGGTAACAAGGCTTGTAAATCCAACACAACTTGCAGAGGTGTAGCGGTTGCAACTGATAATGCAGCAATTGCTTGCCAAATGACTGTAAATTTTGATGTACGATGA 2124 0.451 MVLNERPTKRIKRGATADLHDFFSFPVAGDSTGEPFRFSVLRFLSSHARVTFPPSLFPSLMTWQISFRVGSLDGEPDLSPVTIAVDIVEEEVTRSRSPVYCDQCRVVGWSGHPVCRKRYHFIIRADSSNASEPYQRSCSKCANLIQFSEPRCNWCDSAITVDDIEDWVYDNTHLLHGVVHSNGYGHLLTLNGREGGSKFLSGSDIMGFWDRLCGALSVRKVSVMDLSKKFGLEYRLLHAITEGYSWYGNWGYEFGAGSYALTQDVYRKAVNALSTMPLSSFLFLGRGPRTRLQCVISLYQSLADTGLVTIKDLFSFMLALIHKCRNPLTKTSEQHEDTSTANVLCPWASNDVEDVQQTFIKVLLASGAYSEDKWVSWRFLKGSVCKGAASELLDYSLKHFRGKSASNGMVVQSRCNPVSNAVEFRLDQLSSVQSGFGAISSYPSEEQVISDLRFLFYSIIHPDKMASNGRWIVKKSVVDSARKLLDCKQFMKDYKPEKVAAELPPAIRLWCSVELSDQPKDDPSPPPELIILPLNATLSDLMSEVTSVFQEVYVMYKRFQAEKLLEFGSVSDSYTLKFLLGTSGFVQIQGKCPAKHRLNRFRMERGTEAWKVDCPCGANDDDGERMLACDTCGVWQHTRCAGIDNSDSIPSKFVCLRCLNLYRKKARKLPDLDGNKACKSNTTCRGVAVATDNAAIACQMTVNFDVR* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3221 707 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 677 - -
Apr9g3221 707 Pfam PHD-finger 614 659 IPR019787 -
Apr9g3221 707 ProSitePatterns Zinc finger PHD-type signature. 614 658 IPR019786 -
Apr9g3221 707 SUPERFAMILY FYVE/PHD zinc finger 608 666 IPR011011 -
Apr9g3221 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 663 IPR013083 -
Apr9g3221 707 CDD PHD_MMD1_like 613 658 - -
Apr9g3221 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 677 - -
Apr9g3221 707 SMART PHD_3 613 659 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3221 Apr-Chr9 39525452 39528815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3221 7 658 PHD Transcription Factor Family AT5G22260 27.460 1.07e-83 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr9g3221 PHD 4.9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3221 - - gmx:100780558 1003.82