Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3204 ATGAAAATGACAAATAAGCCAAACCCTGATAGTTCCACCAATAGGTCTCAGCAACAGAAGAATCATCAGAGTGAAAGGGCAAATGGGAATGAAGGATCATCCTCACTCACGTCCACTAACCCTTATCCTCCCCCAACCGCTCTCTATCAGGACCTTGCTCGTGATGAAAAACTTTTCTGGGAAAAGCTTCAATCTTTTCACAATTCATTTGGCACCAGATTTAAGGTTCCTACTGTAGGAGGAAAGCCACTTGATCTATATCACCTTTTCGTAGAAGTAACATCTCGCGGTGGTCTTGAGAAGGTGATTGTAGATCGAAAATGGAAGGAGGTGATTACAGCCTTCCAGTTCCGGGATACCATAACGAGTGCATCATTTATGGTGCGCAAATGCTATCTGTCATTGCTTTATCACTTTGAGCAAGTGTATTACTTTCGGAAGCAAGGCCGTCCTTCCTTGACACCTGATTCTGCAAATCGAAGCCTTGCCAATAGCTCTGCTACCGATAAAGAAGGTGCTGCCGTGAATGATCCACCTGTTCAGACTAGTCCAGTACAGGCACCTGGTTCTGTGCTTCCTGGAACGATTGATGTGAAGTTTGATGGTGGATACGTAGTTACAGTGAATCTGGGTTCTGAACAGCTGAAAGGTGTCCTGTATCATGTTCCTGATGTGTCCCAGACTTCTCATGCTGAAGGAACGGCTAGTTTGCAGAATCGAAAGAGATCAAGATTAGCATCACGTGATCCATCTCGGCCAAAGTCAAACAGGAGTGGATACAATTTCTTCTTTGCTGAGAATTATGCCAAGCTAAAACCCTCATTTCAGGGGCAAGAGAGAGCAATTAGTAAGAGGATTGGATTTCTGTGGAGCAATCTGTCAGACGCAGAAAGACAGGTTTACCAGGAGAAAGGGTTGAGAGATAAAGAAAGATACAGGACTGAAATGTTGGAGTATAAATCCAATAATTCAACTTCAAATACTCAATAG 990 0.4354 MKMTNKPNPDSSTNRSQQQKNHQSERANGNEGSSSLTSTNPYPPPTALYQDLARDEKLFWEKLQSFHNSFGTRFKVPTVGGKPLDLYHLFVEVTSRGGLEKVIVDRKWKEVITAFQFRDTITSASFMVRKCYLSLLYHFEQVYYFRKQGRPSLTPDSANRSLANSSATDKEGAAVNDPPVQTSPVQAPGSVLPGTIDVKFDGGYVVTVNLGSEQLKGVLYHVPDVSQTSHAEGTASLQNRKRSRLASRDPSRPKSNRSGYNFFFAENYAKLKPSFQGQERAISKRIGFLWSNLSDAERQVYQEKGLRDKERYRTEMLEYKSNNSTSNTQ* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3204 329 MobiDBLite consensus disorder prediction 154 171 - -
Apr9g3204 329 SMART ARID_2 50 140 - -
Apr9g3204 329 MobiDBLite consensus disorder prediction 1 47 - -
Apr9g3204 329 CDD HMGB-UBF_HMG-box 253 316 - -
Apr9g3204 329 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677
Apr9g3204 329 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 22 327 - -
Apr9g3204 329 SMART bright_3 54 145 IPR001606 GO:0003677
Apr9g3204 329 MobiDBLite consensus disorder prediction 230 258 - -
Apr9g3204 329 MobiDBLite consensus disorder prediction 1 45 - -
Apr9g3204 329 Gene3D High mobility group box domain 236 329 IPR036910 -
Apr9g3204 329 SUPERFAMILY HMG-box 247 324 IPR036910 -
Apr9g3204 329 Gene3D - 47 160 IPR036431 GO:0003677
Apr9g3204 329 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 253 320 IPR009071 -
Apr9g3204 329 Pfam HMG (high mobility group) box 253 320 IPR009071 -
Apr9g3204 329 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Apr9g3204 329 Pfam ARID/BRIGHT DNA binding domain 56 140 IPR001606 GO:0003677
Apr9g3204 329 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 22 327 - -
Apr9g3204 329 SMART hmgende2 252 321 IPR009071 -
Apr9g3204 329 MobiDBLite consensus disorder prediction 154 188 - -
Apr9g3204 329 SUPERFAMILY ARID-like 51 154 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3204 Apr-Chr9 38958857 38965039 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3204 47 328 ARID Transcription Factor Family AT3G13350 52.759 1.51e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Apr9g3204 ARID 2.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3204 - - gmx:100793029 452.981