Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3200 ATGTGGACGATGGTGAGGAAGGTGTGGGAATTGGCGTTGTTGAGATCCAACGCATCAGAAGCAATTACGCATTCGGACATGGGTGAATTGGAGCAGTTACCCGCTGACATTTTGATGCAAATTCTGAGGCTTTTGGGTCCGAAAGAAGCTGCAAAATTGAGTGTGGTTTGCAAGGCTTTCAGATCCCTTGTGTTTGATAATCGCCTTTGGATTCAATTTCTTCAGACCCACCAAGCTGAACCCTCTTGGGATTCTCTCTTCTTTGCTGAGACCGCATTGAGCTCTGGGTACCCTCTTCCATCCTTTGTTGGCCATAGACCTCAACTATCATTCAAGCATATTTATGGCCAGAGAGCACAAGTTCCTGGTTCTATTATTATTGATGGCGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCATGTCCATCAGGCCGATCAGCAACATTTTTGGAATTTGGTAACAATAACATTGAGTTGCCAATGTATACTAGGCTTCGACATTTTTTCACAACTATTTATAACAGGATGCAGGTGAAACCAAATAAACAACCAATTATTGTTTCTATACCAATATGCCATTATGAAGATACTGAATCAGCTAAAGCATCAAGACAACAGCTTAAAGAAGCAATTTATGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCAACTCTTGCTCTTTATGCTGCAAAACGAACTTCTGGAATAGCTGTTAATATAGGTTTTGAAGTCACATCTATAGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTCATGGGACTGGGCGCACTGAAACTTACAGGATTTCTTAGGGAGAAGATGCAACTCAATAACTTAAGTTTTCAATCTTTTTATACTGTTCGCACATTGAAAGAGAAGTTATGTTATGTTGCTCTTGATTATGAAGCTGAGCTATCAAAAGATACACAAGCATCATTTGAAGATGTAGAAGGATCATTTACACTTTCAAAAGAGAGGTTTCAGACAGGAGAGATCTTATTCCAGCCACATCTTGCTGGAGTGCACGCTATGGGTTTGCACCAGGCCATAGCTCGTTGTGTGGAACATTGCCATTCTGCTGAATTAGCAGGCGACAGTGATTGGTATAAGACTATAGTTTTATCTGGAGGAACTGCATGTTTACCAGGTTTGGCAGAAAGGATAGAAAAGGAACTCTATGCCTTGCTTCCTCCATACATGTCCAATGGAATTAGAGCCATACCTCCTCCGTTCGGTGCTGATACACCATGGTTTGGAGCTAAGATTATTGGCAATTTGAGCACCTTTCCTGGTCCTTGGTGTGTGACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAACCTCATATGGTGA 1392 0.4174 MWTMVRKVWELALLRSNASEAITHSDMGELEQLPADILMQILRLLGPKEAAKLSVVCKAFRSLVFDNRLWIQFLQTHQAEPSWDSLFFAETALSSGYPLPSFVGHRPQLSFKHIYGQRAQVPGSIIIDGGSGYCKFGWSKYACPSGRSATFLEFGNNNIELPMYTRLRHFFTTIYNRMQVKPNKQPIIVSIPICHYEDTESAKASRQQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIAVNIGFEVTSIVPILNGKVMRKVGVEVMGLGALKLTGFLREKMQLNNLSFQSFYTVRTLKEKLCYVALDYEAELSKDTQASFEDVEGSFTLSKERFQTGEILFQPHLAGVHAMGLHQAIARCVEHCHSAELAGDSDWYKTIVLSGGTACLPGLAERIEKELYALLPPYMSNGIRAIPPPFGADTPWFGAKIIGNLSTFPGPWCVTKKQFRQKPRLNLIW* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3200 463 Gene3D Actin; Chain A, domain 4 274 356 - -
Apr9g3200 463 PANTHER ACTIN 79 460 IPR004000 -
Apr9g3200 463 SUPERFAMILY Actin-like ATPase domain 124 246 IPR043129 -
Apr9g3200 463 CDD NBD_sugar-kinase_HSP70_actin 125 272 - -
Apr9g3200 463 ProSiteProfiles F-box domain profile. 27 73 IPR001810 GO:0005515
Apr9g3200 463 Gene3D - 14 97 - -
Apr9g3200 463 SMART fbox_2 33 73 IPR001810 GO:0005515
Apr9g3200 463 Pfam F-box-like 31 70 IPR001810 GO:0005515
Apr9g3200 463 Gene3D - 231 428 - -
Apr9g3200 463 PANTHER MACRONUCLEAR ACTIN 79 460 - -
Apr9g3200 463 SUPERFAMILY F-box domain 25 87 IPR036047 GO:0005515
Apr9g3200 463 Gene3D - 164 455 - -
Apr9g3200 463 SMART actin_3 122 453 IPR004000 -
Apr9g3200 463 Pfam Actin 172 453 IPR004000 -
Apr9g3200 463 SUPERFAMILY Actin-like ATPase domain 240 454 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3200 Apr-Chr9 38874006 38882810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3200 173 459 Cytoskeleton Gene Families AT3G12110 33.108 1.69e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3200 K16616 - gmx:100791973 799.66