Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr9g3167 | ATGTCTCTCATCCCAACCATGGCTGCGTTCAAATCCCTCACAGTTGCAGAATCATGCCTTCTTTCTCTACCTTCACTCTTTCACACCAAAACCAAATACCCTTTTTTCTCAATTCCTTCTAAGCCCCTCAAACTCCAACTTTCACGCTCTCACTCCTCACTCTTTTCCCTCACTACCACCCCAACCCGCCATTCCTCTCCCCTTACATTCGTGGCCCAGACATCAGATTGGGCCCAACAAGAAGAAGAAGAAGACGGTGAAGGAAGCGCGTGGGAGAATCAAGGTGACCCCACGTGGGGAACTGAAGATGTTGATGAAATTGAAGGTAGTGAAGGGGAAGTAGAGGGTAGTGAAGATGGGGCTTTTGGGGAAGAGAGTTTTGCTCAACCATCTGATGAAGTCAAAATATTTGTTGGAAACTTGCCTTTTGATGTTGACAGTGAGAAATTGGCATCGCTCTTTGAGCAGGCTGGCACCGTCGAGGTTGCTGAGGTCATTTATAGTAGGGTCACTGACCGAAGTCGCGGGTTTGGATTTGTTACCATGAGTACCATGGAAGAGGTTGAGAAGGCTGTGGATATGTTCAGTGGCTATGAGCTAGATGGAAGATTGTTGACTGTTAATAAGGCAGCTCCAAGAGGAGCGCAGCCTGAACGCTCTTCACGGGCCTTTGGTTCTGCTTTAAGAGTCTACGTTGGCAACTTGCCGTGGGATGTTGACAATGCTCGCCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGAATGCTCGGGTAGTCTATGACAGAGAGACTGGTCGATCACGTGGTTTTGGCTTTGTCACAATGTCCAGTGAGGCTGATATGAATGATGCCATTGCTGCTCTTGATGGTCAGAACTTGGACGGCAGGGCAATAAGAGTTAATGTTGCAGAGGACAGGTCCAGACGTAGCTCCTTTTGA | 942 | 0.4798 | MSLIPTMAAFKSLTVAESCLLSLPSLFHTKTKYPFFSIPSKPLKLQLSRSHSSLFSLTTTPTRHSSPLTFVAQTSDWAQQEEEEDGEGSAWENQGDPTWGTEDVDEIEGSEGEVEGSEDGAFGEESFAQPSDEVKIFVGNLPFDVDSEKLASLFEQAGTVEVAEVIYSRVTDRSRGFGFVTMSTMEEVEKAVDMFSGYELDGRLLTVNKAAPRGAQPERSSRAFGSALRVYVGNLPWDVDNARLEQIFSEHGKVENARVVYDRETGRSRGFGFVTMSSEADMNDAIAALDGQNLDGRAIRVNVAEDRSRRSSF* | 314 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr9g3167 | 313 | CDD | RRM_HP0827_like | 135 | 212 | - | - | |
Apr9g3167 | 313 | Gene3D | - | 219 | 313 | IPR012677 | - | |
Apr9g3167 | 313 | Gene3D | - | 71 | 218 | IPR012677 | - | |
Apr9g3167 | 313 | CDD | RRM_HP0827_like | 229 | 305 | - | - | |
Apr9g3167 | 313 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 228 | 306 | IPR000504 | GO:0003723 | |
Apr9g3167 | 313 | SMART | rrm1_1 | 135 | 208 | IPR000504 | GO:0003723 | |
Apr9g3167 | 313 | SMART | rrm1_1 | 229 | 302 | IPR000504 | GO:0003723 | |
Apr9g3167 | 313 | PANTHER | OS02G0815200 PROTEIN | 6 | 313 | - | - | |
Apr9g3167 | 313 | MobiDBLite | consensus disorder prediction | 99 | 120 | - | - | |
Apr9g3167 | 313 | SUPERFAMILY | RNA-binding domain, RBD | 228 | 311 | IPR035979 | GO:0003676 | |
Apr9g3167 | 313 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 134 | 212 | IPR000504 | GO:0003723 | |
Apr9g3167 | 313 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 230 | 300 | IPR000504 | GO:0003723 | |
Apr9g3167 | 313 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 136 | 205 | IPR000504 | GO:0003723 | |
Apr9g3167 | 313 | MobiDBLite | consensus disorder prediction | 74 | 125 | - | - | |
Apr9g3167 | 313 | PANTHER | RIBONUCLEOPROTEIN | 6 | 313 | - | - | |
Apr9g3167 | 313 | SUPERFAMILY | RNA-binding domain, RBD | 130 | 224 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr9g3167 | Apr-Chr9 | 38451760 | 38455709 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr9g3167 | 126 | 310 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 34.010 | 9.32e-23 | 96.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr9g3167 | - | - | gmx:100811487 | 426.017 |