Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3167 ATGTCTCTCATCCCAACCATGGCTGCGTTCAAATCCCTCACAGTTGCAGAATCATGCCTTCTTTCTCTACCTTCACTCTTTCACACCAAAACCAAATACCCTTTTTTCTCAATTCCTTCTAAGCCCCTCAAACTCCAACTTTCACGCTCTCACTCCTCACTCTTTTCCCTCACTACCACCCCAACCCGCCATTCCTCTCCCCTTACATTCGTGGCCCAGACATCAGATTGGGCCCAACAAGAAGAAGAAGAAGACGGTGAAGGAAGCGCGTGGGAGAATCAAGGTGACCCCACGTGGGGAACTGAAGATGTTGATGAAATTGAAGGTAGTGAAGGGGAAGTAGAGGGTAGTGAAGATGGGGCTTTTGGGGAAGAGAGTTTTGCTCAACCATCTGATGAAGTCAAAATATTTGTTGGAAACTTGCCTTTTGATGTTGACAGTGAGAAATTGGCATCGCTCTTTGAGCAGGCTGGCACCGTCGAGGTTGCTGAGGTCATTTATAGTAGGGTCACTGACCGAAGTCGCGGGTTTGGATTTGTTACCATGAGTACCATGGAAGAGGTTGAGAAGGCTGTGGATATGTTCAGTGGCTATGAGCTAGATGGAAGATTGTTGACTGTTAATAAGGCAGCTCCAAGAGGAGCGCAGCCTGAACGCTCTTCACGGGCCTTTGGTTCTGCTTTAAGAGTCTACGTTGGCAACTTGCCGTGGGATGTTGACAATGCTCGCCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGAATGCTCGGGTAGTCTATGACAGAGAGACTGGTCGATCACGTGGTTTTGGCTTTGTCACAATGTCCAGTGAGGCTGATATGAATGATGCCATTGCTGCTCTTGATGGTCAGAACTTGGACGGCAGGGCAATAAGAGTTAATGTTGCAGAGGACAGGTCCAGACGTAGCTCCTTTTGA 942 0.4798 MSLIPTMAAFKSLTVAESCLLSLPSLFHTKTKYPFFSIPSKPLKLQLSRSHSSLFSLTTTPTRHSSPLTFVAQTSDWAQQEEEEDGEGSAWENQGDPTWGTEDVDEIEGSEGEVEGSEDGAFGEESFAQPSDEVKIFVGNLPFDVDSEKLASLFEQAGTVEVAEVIYSRVTDRSRGFGFVTMSTMEEVEKAVDMFSGYELDGRLLTVNKAAPRGAQPERSSRAFGSALRVYVGNLPWDVDNARLEQIFSEHGKVENARVVYDRETGRSRGFGFVTMSSEADMNDAIAALDGQNLDGRAIRVNVAEDRSRRSSF* 314
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3167 313 CDD RRM_HP0827_like 135 212 - -
Apr9g3167 313 Gene3D - 219 313 IPR012677 -
Apr9g3167 313 Gene3D - 71 218 IPR012677 -
Apr9g3167 313 CDD RRM_HP0827_like 229 305 - -
Apr9g3167 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 306 IPR000504 GO:0003723
Apr9g3167 313 SMART rrm1_1 135 208 IPR000504 GO:0003723
Apr9g3167 313 SMART rrm1_1 229 302 IPR000504 GO:0003723
Apr9g3167 313 PANTHER OS02G0815200 PROTEIN 6 313 - -
Apr9g3167 313 MobiDBLite consensus disorder prediction 99 120 - -
Apr9g3167 313 SUPERFAMILY RNA-binding domain, RBD 228 311 IPR035979 GO:0003676
Apr9g3167 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 212 IPR000504 GO:0003723
Apr9g3167 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 300 IPR000504 GO:0003723
Apr9g3167 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 205 IPR000504 GO:0003723
Apr9g3167 313 MobiDBLite consensus disorder prediction 74 125 - -
Apr9g3167 313 PANTHER RIBONUCLEOPROTEIN 6 313 - -
Apr9g3167 313 SUPERFAMILY RNA-binding domain, RBD 130 224 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Apr9g3167 Apr-Chr9 38451760 38455709 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3167 126 310 Eukaryotic Initiation Factors Gene Family AT3G16380 34.010 9.32e-23 96.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3167 - - gmx:100811487 426.017
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0244 1 2653031 2657168 Apr9g3167 9 38451760 38455709 ECH
Apr9g3167 9 38451760 38455709 Apr9g3167 9 38451760 38455709 ECH
Apr9g3167 9 38451760 38455709 Apr1g0244 1 2653031 2657168 PCT