Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3155 ATGGCTATTTCAATTTCTTCTTCAGCAGCTTCAAAGCTCACATACCCTAACAACCCCTATGCATCTTCCTCTCTCTCCCCCTCACACTCTTCCAATTCCCTTTTTCTCAAACCCCACACACACTCCACAACCCACCTCTCTTCTTCCTTCATAAACCCCTCCACAATCCTCCACCTCACCCCCACGCCCTCCGCCGCCACCACTCTCCGCCGCTCCCTCACCGTACGCGCCGCCCGGGGCAAGTTCGAGCGCAAGAAGCCCCATGTCAACATCGGCACCATCGGCCATGTCGACCACGGCAAAACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAACAGCGCCCCCAAAAAATACGACGAAATCGACGCCGCTCCCGAAGAACGTGCTCGTGGCATCACCATCAACACCGCCACCGTAGAATATGAAACCGAGAACCGCCACTACGCCCACGTCGACTGTCCCGGCCACGCCGACTACGTTAAAAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATCCTCGTTGTCTCCGGCGCCGACGGCCCCATGCCCCAAACCAAAGAACACATTCTCCTCGCCAAACAAGTGGGTGTCCCCAACATGGTCGTGTTCCTCAACAAACAGGACCAGGTCGATGACGAGGAGCTTTTGCAACTCGTTGAATTGGAGGTTCGTGAGCTTCTCTCCTCTTATGAATTTCCCGGCGATGATGTTCCCATTATTTCTGGTTCCGCTTTGTTGGCTTTGGAAGCTTTGATGGCTAACCCTGCAATCAAGCGTGGTGAAAACCAATGGGTTGATAAAATTTACGAGCTTATGGATGCTGTGGATAGCTACATTCCCATTCCTCAGCGCCAAACGGATCTTCCCTTCTTGCTCGCCGTTGAAGACGTGTTTTCGATCACCGGTCGTGGAACCGTCGCCACCGGCCGTGTTGAGAGGGGTACTATTAGGGTCGGAGACACGGTTGATATTGTTGGTGTGAGGGAAACTAGGAACACCACTGTCACTGGGGTGGAGATGTTTCAGAAGATTCTAGATGAGGCCATGGCTGGTGATAATGTGGGTTTGTTACTTAGAGGTGTTCAGAAGACTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACCATTACTCCTCACACAAAGTTTTCAGCCATTGTGTATGTCTTGAAGAAGGAAGAGGGTGGCAGGCACTCTCCGTTTTTTGCCGGTTATAGGCCTCAGTTTTACATGAGGACTACGGATGTTACTGGCAAAGTGACTGCCATTATGAATGACAAGGATGAGGAGTCCAAGATGGTGATGCCGGGAGACCGTGTTAAGATGGTGGTTGAACTCATTGTTCCTGTGGCTTGTGAACAGGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAGACTGTTGGAGCTGGTGTTATCCAATCCATCATTGAGTGA 1458 0.5261 MAISISSSAASKLTYPNNPYASSSLSPSHSSNSLFLKPHTHSTTHLSSSFINPSTILHLTPTPSAATTLRRSLTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPAIKRGENQWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIRVGDTVDIVGVRETRNTTVTGVEMFQKILDEAMAGDNVGLLLRGVQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3155 485 Gene3D Translation factors 292 420 - -
Apr9g3155 485 Gene3D - 78 289 IPR027417 -
Apr9g3155 485 CDD EFTU_III 386 480 - -
Apr9g3155 485 TIGRFAM EF-Tu: translation elongation factor Tu 78 485 IPR004541 GO:0003746|GO:0005525|GO:0006414
Apr9g3155 485 PANTHER ELONGATION FACTOR TU-RELATED 29 485 - -
Apr9g3155 485 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 384 484 IPR009001 -
Apr9g3155 485 PANTHER ELONGATION FACTOR TU 29 485 - -
Apr9g3155 485 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 127 142 IPR031157 -
Apr9g3155 485 Pfam Elongation factor Tu C-terminal domain 384 483 IPR004160 -
Apr9g3155 485 SUPERFAMILY Translation proteins 291 387 IPR009000 -
Apr9g3155 485 Gene3D Translation factors 424 484 - -
Apr9g3155 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 312 IPR027417 -
Apr9g3155 485 Pfam Elongation factor Tu domain 2 311 379 IPR004161 GO:0005525
Apr9g3155 485 PRINTS GTP-binding elongation factor signature 90 103 IPR000795 GO:0003924|GO:0005525
Apr9g3155 485 PRINTS GTP-binding elongation factor signature 134 142 IPR000795 GO:0003924|GO:0005525
Apr9g3155 485 PRINTS GTP-binding elongation factor signature 154 164 IPR000795 GO:0003924|GO:0005525
Apr9g3155 485 PRINTS GTP-binding elongation factor signature 170 181 IPR000795 GO:0003924|GO:0005525
Apr9g3155 485 PRINTS GTP-binding elongation factor signature 207 216 IPR000795 GO:0003924|GO:0005525
Apr9g3155 485 CDD EF_Tu 87 289 IPR041709 -
Apr9g3155 485 TIGRFAM small_GTP: small GTP-binding protein domain 89 221 IPR005225 GO:0005525
Apr9g3155 485 Hamap Elongation factor Tu [tuf]. 77 485 IPR004541 GO:0003746|GO:0005525|GO:0006414
Apr9g3155 485 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 86 290 IPR000795 GO:0003924|GO:0005525
Apr9g3155 485 Pfam Elongation factor Tu GTP binding domain 86 287 IPR000795 GO:0003924|GO:0005525
Apr9g3155 485 CDD EFTU_II 297 383 IPR033720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3155 Apr-Chr9 38333373 38335223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3155 84 483 Eukaryotic Initiation Factors Gene Family AT5G60390 30.112 2.81e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3155 K02358 - gmx:100791320 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3155 9 38333373 38335223 Apr9g3155 9 38333373 38335223 ECH