LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr9g3142	ATGAACCCCTACGATAACAGATATTCCAACGCCACTTCTTTTCGTGACCGTCGCAGTGATCTGATTGGATCTATGCCGCCGCGGCCTGTGGTGGGGCGCGGGGGTCCGACTCCCTACGGTGTTCCTTACGGTGCCCCTGGACCCAATTTTGGATCCGCACCCGTTGCCCCGATTCCACCCTTTGTGCCTCCTCCTGGGGGCTTTAACGTAGGCCGAGGCGGTGGTTTTGGTGGTAGAGTGGGCAATGGTCACGTGAGTGATAGAAAGCATGACATAGGTCGCCATCATGGAGGTGGTGGAAGAGGTGGCGGTGGTGGAAGAGGTCGTGGCGGTGGTAGAGCTGGAGCTCACGGTTTTAGGGCCTCGGGGAGAGGAGGTAGACATGGTAGTGGATCTTCTAGGGATGATTTGGACAACATTGCACTCCCCAAGCAAGATTTTAGGAATTTGGTCCCTTTTGAGAAGAATTTCTACGTTGAGAGCCCTTCCGTAAGGGCTATGTCTGATCATGAAGTTATGCATTACCGTGCCAGTAGAGATATCACCGTGCAAGGGCATGATGTGCCAAAACCTGTTCGGATGTTTCACGATGCAAATTTTCCTGATTATTGTCTTGAAGTCATTGCCAATTTGGGTTTTGTTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTAAAGGGTAGAGATTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGGCATATCTGCTTCCTGCTTTAGTGCATGTCAATGCCCAACCTCGATTAGTACAAGGTGAAGGTCCCATTGTCTTAATTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAAGTAGAAGCTCTGAAATTTGGGTCACGAGCTAATATTAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGGCCTCAAATCCGTGACCTTCAAAGAGGTGTTCAGATTGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTGCAGAGAGTGACTTACCTTGTATTGGATGAAGCTGATCGAATGTTAGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGGCCAGATTCGACCAGATAGGCAGACGTTATATTGGAGTGCTACGTGGCCAAGGGAGGTTGAAACTCTTGCAAGGCAGTTTCTGCGCAACCCGTATAAGGTAATTATTGGGTCACCAGATCTGAAAGCTAATCAATCCATAAATCAAGTTGTTGAAGTTCTAACTGACATGGAGAAATACAATAGATTGATCAGACTTCTAAAAGAAGCAATGGATGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGACCAAGTTACTAGACAATTGAGAATGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAAAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGTGGTCTTGATGTGAAAGACATTAAATGTGTGATCAATTATGATTTTCCATCAAGCTTGGAAGATTATGTCCACAGAATTGGCCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACACATTTTTCACACATGCCAATGCCAAGTTTGCTAGGGATCTGATTAAGATTTTACAAGATGCCGGTCAGGCTGTGAGTCCTTCACTGTCTGCATTGGTTCGGTCAGCTGGTTCTGGATCTGGAGGAAATTTTCGCTCAAGGGGACGAGGAAGCTATGGTAATCGGGGTTTAATATCAGGATCCAATGCCATCCCTCTAGGTTCCAAGAGGCCTTGGCAGTGTCTGTAG	1845	0.4688	MNPYDNRYSNATSFRDRRSDLIGSMPPRPVVGRGGPTPYGVPYGAPGPNFGSAPVAPIPPFVPPPGGFNVGRGGGFGGRVGNGHVSDRKHDIGRHHGGGGRGGGGGRGRGGGRAGAHGFRASGRGGRHGSGSSRDDLDNIALPKQDFRNLVPFEKNFYVESPSVRAMSDHEVMHYRASRDITVQGHDVPKPVRMFHDANFPDYCLEVIANLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGEGPIVLILAPTRELAVQIQVEALKFGSRANIRSTCIYGGAPKGPQIRDLQRGVQIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSPDLKANQSINQVVEVLTDMEKYNRLIRLLKEAMDGSRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQAVSPSLSALVRSAGSGSGGNFRSRGRGSYGNRGLISGSNAIPLGSKRPWQCL*	615

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr9g3142	614	CDD	SF2_C_DEAD	412	542	-	-
	Apr9g3142	614	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	345	353	IPR000629	-
	Apr9g3142	614	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	73	596	-	-
	Apr9g3142	614	Pfam	DEAD/DEAH box helicase	217	388	IPR011545	GO:0003676\|GO:0005524
	Apr9g3142	614	PANTHER	LD32873P	73	596	-	-
	Apr9g3142	614	Gene3D	-	405	575	IPR027417	-
	Apr9g3142	614	MobiDBLite	consensus disorder prediction	1	33	-	-
	Apr9g3142	614	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	224	399	IPR014001	-
	Apr9g3142	614	Gene3D	-	166	404	IPR027417	-
	Apr9g3142	614	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	427	572	IPR001650	-
	Apr9g3142	614	CDD	DEADc_DDX5_DDX17	205	399	-	-
	Apr9g3142	614	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	193	221	IPR014014	GO:0003724
	Apr9g3142	614	MobiDBLite	consensus disorder prediction	83	97	-	-
	Apr9g3142	614	Pfam	Helicase conserved C-terminal domain	423	533	IPR001650	-
	Apr9g3142	614	SMART	helicmild6	452	533	IPR001650	-
	Apr9g3142	614	MobiDBLite	consensus disorder prediction	81	139	-	-
	Apr9g3142	614	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	266	553	IPR027417	-
	Apr9g3142	614	SMART	ultradead3	212	415	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr9g3142	Apr-Chr9	38248796	38253516	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr9g3142	190	553	Eukaryotic Initiation Factors Gene Family	AT3G19760	35.989	1.46e-70	232

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr9g3142	K12823		-	gmx:100817092	913.294