Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3140 ATGACGACAAGGTTCAAGAAGAACAGGAAGAAGAGAGGTCACGTGAGCGCCGGCCACGGGCGTATCGGAAAGCACCGGAAGCACCCTGGAGGTCGCGGTAACGCCGGAGGCATGCACCACCACCGCATCCTCTTCGACAAGTACCATCCCGGTTACTTCGGTAAGGTTGGTATGCGCTACTTCCACAAGCTCCGCAACAAGTTCTATTGCCCCATCGTCAACATCGACAAACTGTGGTCAATGGTTTTGGGCAAAGGGGTTTTGCCACAGAATCAGCCCCTTGTCGTTAAGGCGAAGCTCGTTTCCAAGATTGCCGAGAAGAAGATCAAGGAGGCTGGTGGTGCCGTTGTCCTCACCGCTTGA 363 0.5482 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSMVLGKGVLPQNQPLVVKAKLVSKIAEKKIKEAGGAVVLTA* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3140 120 Hamap 50S ribosomal protein L15 [rplO]. 1 119 IPR030878 GO:0003735|GO:0006412|GO:0015934
Apr9g3140 120 MobiDBLite consensus disorder prediction 1 35 - -
Apr9g3140 120 Gene3D - 58 81 - -
Apr9g3140 120 SUPERFAMILY Ribosomal proteins L15p and L18e 6 119 IPR036227 -
Apr9g3140 120 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 82 117 IPR021131 -
Apr9g3140 120 PANTHER 60S RIBOSOMAL PROTEIN L27A 82 120 - -
Apr9g3140 120 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 82 - -
Apr9g3140 120 MobiDBLite consensus disorder prediction 1 36 - -
Apr9g3140 120 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 82 120 - -
Apr9g3140 120 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 82 - -
Apr9g3140 120 Gene3D - 82 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3140 Apr-Chr9 38239840 38240425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3140 1 120 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 76.027 2.76e-74 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3140 K02900 - rcu:8273503 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3140 9 38239840 38240425 Apr9g3140 9 38239840 38240425 ECH