Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3137 ATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAATTGAGGAAAGGCTTATGGTCCCCTGAAGAAGATGAGAAGCTATTCAATTACATAACAAGATTTGGAGTTGGATGCTGGAGTTCAGTTCCCAAACTAGCTGGATTGCAAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATCTTAGGCCTGATTTAAAGAGAGGGTTGTTCTCTCAGCAGGAGGAGGATCTTATAATCAGTCTTCATGAAGTGCTTGGAAATAGGTGGGCTCAAATAGCAGCACAGTTACCAGGGAGAACAGATAATGAGATTAAAAACTTTTGGAATTCATGTTTAAAGAAGAAGCTTCTGAAGCAAGGGATTGACCCAACTACCCACAAGCCTCTTACTGAAGCTCATGTAAAGGAAGAAAAGAAAAGCACAGAGACAACTTCTATGCAAACGCCATTGTCTCAAGGGCCTTCGGCTACATCAACCTTTGCATCATCACAGGGATCAGGACTTCTAATAAGCGATTCCAATTACTATGATGGAGGGCTAACAGAAGCTTCAAGAGAAATTTTCATGAGCAAGCCAGCATTGGACCCTTTGTCCTACTATGATTTCCCAATGGGCGTTACACAGTCAGGTTTTAACTTACCTGTGAGTCATTATCACACAAGCCTTAGAGCATGTGATCAGGGCCAGTTTGGAACCAATTCAAGCTTTGGATTCTCTTCAATGCCAAGTCTAACCAATTCTGATCATGGAAACTTGTCGGTGACTGAGTTTTCAGACAATAATTCAGCCTCCAAAATCAGTTCATTGTTCATGAATGATCAGGTGAAAGAGAGTTCCAGCAACAGCTCAAACATGAGTACTATTTATCCAGGAGGAGGGTGTGATATGAGAAGCATGATGGAGAATGCAGGGTTCTCTTGGGACGGTGAGAACAAGTTTGACCCCTTGTTTCAGTTCCAAGTAAATGCCGTAAAATCTGAGGATTTTAAGACAAGTTCATGGGAAGAAGCGCAGCTGCAGACTCACAACTCCATAGATTTCACTAGCTTTCCACTATCATCACTTACTGAAGATCTAACAGGAGCAAATTTTGATGTATTCCAGCATATCTGA 1113 0.4169 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGLFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPLTEAHVKEEKKSTETTSMQTPLSQGPSATSTFASSQGSGLLISDSNYYDGGLTEASREIFMSKPALDPLSYYDFPMGVTQSGFNLPVSHYHTSLRACDQGQFGTNSSFGFSSMPSLTNSDHGNLSVTEFSDNNSASKISSLFMNDQVKESSSNSSNMSTIYPGGGCDMRSMMENAGFSWDGENKFDPLFQFQVNAVKSEDFKTSSWEEAQLQTHNSIDFTSFPLSSLTEDLTGANFDVFQHI* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3137 370 Gene3D - 11 67 - -
Apr9g3137 370 SMART sant 66 114 IPR001005 -
Apr9g3137 370 SMART sant 13 63 IPR001005 -
Apr9g3137 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr9g3137 370 CDD SANT 70 109 IPR001005 -
Apr9g3137 370 MobiDBLite consensus disorder prediction 128 142 - -
Apr9g3137 370 CDD SANT 17 61 IPR001005 -
Apr9g3137 370 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr9g3137 370 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr9g3137 370 PANTHER MYB TRANSCRIPTION FACTOR 1 366 - -
Apr9g3137 370 Gene3D - 69 146 - -
Apr9g3137 370 MobiDBLite consensus disorder prediction 143 160 - -
Apr9g3137 370 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr9g3137 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr9g3137 370 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr9g3137 370 PANTHER MYB DOMAIN PROTEIN 55 1 366 - -
Apr9g3137 370 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Apr9g3137 370 MobiDBLite consensus disorder prediction 123 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3137 Apr-Chr9 38216720 38218073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3137 1 141 MYB Transcription Factor Family AT1G57560 79.433 1.37e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g3137 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3137 K09422 - gmx:100811140 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3137 9 38216720 38218073 Apr9g3137 9 38216720 38218073 ECH
Apr9g3137 9 38216720 38218073 Apr1g0776 1 9415597 9417236 PCT