Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3127 ATGCCTGTAAATCCATGGACCCTCTTCTTCTTATGCATTTCCCTTTTAGTTCCATTCCATTCTTTTATTGCTCATGCAGTGAACCAACAAGGGAAAGCTCTTCTTTCATGGAAGAGAACCCTGAATGGATCACTGGAGGTATTGAGTAACTGGGACCCAATTGAAGACACCCCATGTAGCTGGTTTGGTGTGAGTTGCAACTGGAAGAATGAAGTAGTACAATTGGATTTGAGGTATGTGGATTTGCTTGGAAGACTTCCCTCTAATTTCACCTCATTGCTTTCCTTGAACAGCCTTATCTTAACCGGAACCAACCTCACCGGTTCAATCCCAAAAGAAATAGGCAACCTCTTCCGACTCAGCTACTTGGACTTGAGTGACAATGCCTTGAGTGGGGAAATCCCAAGCGAGCTATGTTACTTGCCACAACTCCAGGAACTCCATCTCAACTCCAACGACCTTGTGGGGTCCATTCCACTTGCAATTGGGAACCTCACGAAGTTGGAGAAGCTGATCCTGTACGACAATCAACTCAGTGGTGAAGTTCCTAGTACTATTGGCTACCTGAGGAACCTTCAAGTGATAAGAGCCGGAGGAAACAAGAACCTGGAAGGTTCTTTGCCACAAGAAATTGGTAACTGTTCCAGTTTGGTGATGTTGGGCTTGGCAGAAACAAGCATCACAGGTTCTCTGCCACCAAGTCTTGGCCTTCTCAAGAACCTTGAAACCATTGCCCTCTACACTTCCCTGCTCTCTGGCCAAATACCCCCTGAACTTGGCGACTGCACAGAGCTCCAAAACATTTATCTTTACGAGAACTCCCTCACAGGATCCATACCAAGCAAATTGGGAAACCTTAAGAACCTCAAAAACCTTCTGCTGTGGCAGAACAATCTTGTTGGCCCCATCCCACCTGAGATTGGAAACTGCGAGCAGTTATCAGTGATTGATGCGTCAATGAATTCAATAACGGGAAGCATTCCCAGAACTTTCGAGAACTTGACGTCACTGCAAGAGCTCCAACTCAGTGTGAACCAGATTTCGGGGGAGATTCCTGGGGAATTGGGCAAGTGTCAGCAGCTGACGCACGTAGAACTAGACAACAACCTAATCACGGGCTCAATACCCTCCGAAATAGGAAACCTTGGGAATCTAACGTTGTTGTTTCTGTGGCACAACAACCTGCAAGGTAACATTCCCTCGTCCCTTTCCAATTGTCAAAACCTAGAGGCCATTGATCTTTCGCAGAATGGATTAACGGGTCCCATTCCAAAGGGGATATTCCAGCTCAAGAATCTCAACAAGCTTTTGCTCCTCTCTAATAATCTTTCCGGGAAAATCCCCTCTCAGATTGGGAATTGTTCCTCCCTTATTCGCTTCCGAGCTAACAACAACAACATCACCGGGAGCATCCCCTCGCAGATTGGGAATCTCATCAATTTGAATTTCTTGGACCTGGGGAGCAATCGAATTTCCGGCGTTATCCCGGAGGAGATCTCCAGCTGCCGGAATCTCACATTTTTGGACTTACATTCCAACTTCATCTCCGGAAATTTGCCGGAAAGTTTGAACCAGCTCGTTTCGCTTCAGTTTCTCGATGTCTCCGATAACATGATCGAAGGTACTCTGAGTCCTACCCTTGGCTCGCTCGCCGCACTCTCCAAACTCGTTCTCGGGAAGAATCAAATCTCCGGCTCCATTCCGAGTCGACTCGGTTCTTGTGCCAAGCTGCAGTTGCTGGACCTCAGCAGCAACCGTCTCTCCAGCGAAATCCCCGGCAGCATCGGCAATATTCCAGCGCTGGAAATCGCTCTGAATCTGAGCCTAAACCAGCTCTCCGGCGAGATACCTCAGGAGTTTTCCGGCTTGACGAAGCTCGGAGTGTTGGACATTTCTCACAATTTTCTCGAGGGGAACCTCGAGTATCTCGCTGACCTGCAAAATCTCGTGGTCCTCAATATCTCGCACAACAAATTCTCCGGACGGGTCCCGGACACGCCTTTCTTCGCGAAGCTTCCCCTCAGCGTGCTTGCCGGAAACCCGATGCTGTGCTTCTCCGGCAACCAGTGTAACGGCGTCGGGAGATCGGGGAGGCGTGCGAGGGTGGCGCGCGCGGCCATGGTGGTCCTGCTGTGCACGGCGTGCGTGTTGCTCATGGCGGCGCTGTACGTTGTCGTCGCAGCAAAACGACGAGGGGACCGGAAAAACGACATGGAGATAGATGGAAAGGACAGCGACGCAGACATGGCCCCACCCTGGGAGGTGACACTGTACCAGAAACTCAACCTGTCTATTTCTGACGTAGCCATATGTCTATCTGCTGGCAACGTCATCGGCCACGGTCGATCCGGCGTCGTTTACAAGGTGGACATGCCGGCGACGGAACTGACCATAGCGGTTAAGAAGTTTCGGTCGTCGGAGAAATTCTCGGCGGCGGCGTTTTCATCCGAGATCGCGACGCTGGCGCGAATCCGTCATCGGAATATTGTGCGGCTGTTGGGTTGGGGAGCGAACCGGAGAACGAAATTACTGTTCTATGATTATTTACCCAACGGTAATTTGGACACGTTGTTACACGAGGGGTGCACAGGATTAATCGACTGGGAGACGCGGCTCAAGATAGCCCTGGGCGTGGCTGAGGGTGTGGCTTACTTGCATCACGATTGCGTCCCTGCTATCTTGCACCGGGACGTCAAGGCGCAGAACATTTTGTTAGGAGACAGATATGAACCCTGTTTGGCTGATTTTGGATTCGCTCGATTCGTCGAAGAGGATCAAGCTTCTTTTTCCGTTAATCCTCAGTTCGCCGGTTCCTATGGCTACATTGCGCCCGAGTATGCATGCATGCTTAAAATCACAGAGAAGAGCGATGTGTACAGCTTTGGCGTGGTCCTACTAGAGATAATAACGGGGAAAAGGCCCGTAGATCCATCATTCCCGGATGGACAACATGTTATTCAATGGGTACGGGAGCACTTAAAGAGCAAGAAGGACCCAATTGAGGTTCTGGATTCCAAGTTACAAGGCCATCCAGACACACAAATACAAGAGATGTTGCAAGCACTTGGTATCTCTCTGTTGTGCACAAGTAATCGTGCAGGGGATCGACCGACAATGAAAGATGTTGCAGCATTATTGAGAGAAATTCGACATGATTCTCCACCAGGGGCTGAGGCCCACAAGCCCAAAAGAACTGAAGCTTCCTCCTATTCCTCCTCCTCAGTCACCCCAGCTCAGTTATTGCTCCTACAATCCACTTCCCACTCCTCATCACTTGCTTATTCCTCTTCCTCTGGAGCAGCCTACCATCCTCCAAGGAACCAATCCTCAGTTATTCAAAATTAA 3345 0.4981 MPVNPWTLFFLCISLLVPFHSFIAHAVNQQGKALLSWKRTLNGSLEVLSNWDPIEDTPCSWFGVSCNWKNEVVQLDLRYVDLLGRLPSNFTSLLSLNSLILTGTNLTGSIPKEIGNLFRLSYLDLSDNALSGEIPSELCYLPQLQELHLNSNDLVGSIPLAIGNLTKLEKLILYDNQLSGEVPSTIGYLRNLQVIRAGGNKNLEGSLPQEIGNCSSLVMLGLAETSITGSLPPSLGLLKNLETIALYTSLLSGQIPPELGDCTELQNIYLYENSLTGSIPSKLGNLKNLKNLLLWQNNLVGPIPPEIGNCEQLSVIDASMNSITGSIPRTFENLTSLQELQLSVNQISGEIPGELGKCQQLTHVELDNNLITGSIPSEIGNLGNLTLLFLWHNNLQGNIPSSLSNCQNLEAIDLSQNGLTGPIPKGIFQLKNLNKLLLLSNNLSGKIPSQIGNCSSLIRFRANNNNITGSIPSQIGNLINLNFLDLGSNRISGVIPEEISSCRNLTFLDLHSNFISGNLPESLNQLVSLQFLDVSDNMIEGTLSPTLGSLAALSKLVLGKNQISGSIPSRLGSCAKLQLLDLSSNRLSSEIPGSIGNIPALEIALNLSLNQLSGEIPQEFSGLTKLGVLDISHNFLEGNLEYLADLQNLVVLNISHNKFSGRVPDTPFFAKLPLSVLAGNPMLCFSGNQCNGVGRSGRRARVARAAMVVLLCTACVLLMAALYVVVAAKRRGDRKNDMEIDGKDSDADMAPPWEVTLYQKLNLSISDVAICLSAGNVIGHGRSGVVYKVDMPATELTIAVKKFRSSEKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDTLLHEGCTGLIDWETRLKIALGVAEGVAYLHHDCVPAILHRDVKAQNILLGDRYEPCLADFGFARFVEEDQASFSVNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPVDPSFPDGQHVIQWVREHLKSKKDPIEVLDSKLQGHPDTQIQEMLQALGISLLCTSNRAGDRPTMKDVAALLREIRHDSPPGAEAHKPKRTEASSYSSSSVTPAQLLLLQSTSHSSSLAYSSSSGAAYHPPRNQSSVIQN* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3127 1114 Gene3D Ribonuclease Inhibitor 283 361 IPR032675 -
Apr9g3127 1114 PANTHER OS01G0170300 PROTEIN 6 1067 - -
Apr9g3127 1114 ProSiteProfiles Protein kinase domain profile. 772 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g3127 1114 SUPERFAMILY L domain-like 56 305 - -
Apr9g3127 1114 SMART LRR_sd22_2 623 645 - -
Apr9g3127 1114 SMART LRR_sd22_2 262 288 - -
Apr9g3127 1114 SMART LRR_sd22_2 526 541 - -
Apr9g3127 1114 SMART LRR_sd22_2 310 336 - -
Apr9g3127 1114 SMART LRR_sd22_2 574 600 - -
Apr9g3127 1114 SMART LRR_sd22_2 165 191 - -
Apr9g3127 1114 SMART LRR_sd22_2 117 143 - -
Apr9g3127 1114 SMART LRR_sd22_2 478 507 - -
Apr9g3127 1114 SMART LRR_sd22_2 406 435 - -
Apr9g3127 1114 SMART LRR_typ_2 646 679 IPR003591 -
Apr9g3127 1114 SMART LRR_typ_2 334 358 IPR003591 -
Apr9g3127 1114 SMART LRR_typ_2 430 454 IPR003591 -
Apr9g3127 1114 SMART LRR_typ_2 574 598 IPR003591 -
Apr9g3127 1114 SMART LRR_typ_2 478 502 IPR003591 -
Apr9g3127 1114 SMART LRR_typ_2 286 310 IPR003591 -
Apr9g3127 1114 SMART LRR_typ_2 117 141 IPR003591 -
Apr9g3127 1114 SMART LRR_typ_2 165 189 IPR003591 -
Apr9g3127 1114 SMART LRR_typ_2 526 550 IPR003591 -
Apr9g3127 1114 SMART LRR_typ_2 382 406 IPR003591 -
Apr9g3127 1114 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Apr9g3127 1114 SMART serkin_6 772 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g3127 1114 Gene3D Ribonuclease Inhibitor 362 603 IPR032675 -
Apr9g3127 1114 ProSitePatterns Serine/Threonine protein kinases active-site signature. 893 905 IPR008271 GO:0004672|GO:0006468
Apr9g3127 1114 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 1067 - -
Apr9g3127 1114 Pfam Leucine rich repeat 576 634 IPR001611 GO:0005515
Apr9g3127 1114 Pfam Leucine rich repeat 480 539 IPR001611 GO:0005515
Apr9g3127 1114 ProSitePatterns Protein kinases ATP-binding region signature. 778 802 IPR017441 GO:0005524
Apr9g3127 1114 SUPERFAMILY RNI-like 267 641 - -
Apr9g3127 1114 Gene3D Ribonuclease Inhibitor 26 176 IPR032675 -
Apr9g3127 1114 Gene3D Ribonuclease Inhibitor 604 691 IPR032675 -
Apr9g3127 1114 Gene3D Ribonuclease Inhibitor 177 282 IPR032675 -
Apr9g3127 1114 SUPERFAMILY Protein kinase-like (PK-like) 772 1046 IPR011009 -
Apr9g3127 1114 Pfam Protein kinase domain 775 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g3127 1114 Gene3D Phosphorylase Kinase; domain 1 756 848 - -
Apr9g3127 1114 MobiDBLite consensus disorder prediction 1052 1073 - -
Apr9g3127 1114 MobiDBLite consensus disorder prediction 1091 1114 - -
Apr9g3127 1114 Gene3D Transferase(Phosphotransferase) domain 1 849 1069 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3127 Apr-Chr9 38075519 38079947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3127 26 1098 Receptor kinase-like Gene Family AT5G56040 54.713 0.0 1125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr9g3127 Pkinase 5.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3127 - - gmx:100778064 1845.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3127 9 38075519 38079947 Apr9g3127 9 38075519 38079947 ECH