Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3119 ATGATTACCAGGCTAATCCTGATATCGTCGCTGTTATTAGTATTATTCTCACGTGCGGCTTCCTCTGATGCTGGGGTACACGAAGCGGGACTCACGTGCGGGTCTTTTCAGTACCCCGGAGAAGATTCAGCCAAGTTAAGCCAAGACTTCATGGCTCTAATGGATGCGTTGTCGTTTCAGGTTAAAGAACATGGTTGGGGAGCACAGACATTGCTTGGTTCTGGGAATCCAATGTACGCATTAGGTCAATGCCACCGTGACCTCAATCTCACACAGTGCTACACGTGCTTCGGCCAATCAAGGCAATTATTATCACGATGCATGCCTAAGACAGCTGGTAGAATCTACCTTGACGGTTGCTTCCTTCGTTATGACAACTACTCGTTCTTTCGCGAAAGCTTGGATCCTAGTCATGACATCAACGTGTGCGAGTCAAGGAATCCGTTGGGGAACGACGGTGACAAACGTGTTGCGTCGGTGATTTTGAACGTGACGCAGGCCGCGTCGGAACGCAAGTTTGCGGTGGATGAAGGTGAGGGTGTATTTGCCTTGGCACAGTGCTGGGAGACACTGGATAAATGGAACTGCGAGAGATGTTTGAGAGAGGCAGGGAGAAAACTGCAGGAATGTGTGCCTGCAGCTGAGGGTAGGAGTCTCTTTACTGGTTGCTTTTTCAGATATTCAACTCGCAAATTCTACCACGATGTTACAGTCTCAGTCATTGATACAAAGAATTCTGCAGGAAGGCCTAAAAGAAGGCACAGTGTCTGGTTGATCGTTGCATGTGTTGTATTGGCAATTGTAGCGGTTTTATTAATCATTCTGGCTGCATTTCTATGCTGGAGAAGAAAAGCATTGTATAGAAAAGTAAGCGACCTCGGTGGTGCGTCACCTGGTTTTGCCTACATAGCTGGTTTTAGTTTTAGGTACGATTTGCTTGAGAAGGCCACAAATTATTTTGATCCTGCAAACAAATTAGGGCAGGGTGGATCTGGTTCTGTGTTCAAGGGAACCCTACCCTCAGGGAGCATAGTTGCTGTTAAACGACTGTTTTTCAATACACGACATTGGACAGATGGGCTCTTCAATGAGCTCAATTTGATTAATGGAATTCAACACAAGAATGTGGTGAAACTTTTGGGGTGCAGCATTGAAGGCCCTGAAAGCCTGTTGGTTTATGAATTTGTCCCCAATAGAAGTCTTAATCAAGTCCTTTTCGGTAAGGACTCAGTAAATGCTCTGCCATGGGAACGCCGGTTTCAAATCATATGTGGAATAGCAGAGGGCTTAGCATACCTTCATGGAGGCTCTGGAACAAAGATTATTCATAGAGACATAAAGTCTAGCAACATTCTACTTGATGATAATCTTAATCCAAAAATAGCTGATTTTGGTCTTGCTCGTTGTGTTGCTGAAACTAAATCTCATCTTAGCACAGGAAACACAGGGACACTGGAATATTTGGCTCCTGAGTATCTTGTCAAAGGACAAATGACAGAGAAGTCAGATATCTATGCTTTTGGTGTGTTGGTTGTTGAAATTGTCTGTGGTAAAAAGAACAGTGTTTACAAACCGGGATCAACTTCAATACTCCATAGTGTCTGGAAGAATTACAAGGGAAATAATATCACAGCATCCGTTGATCCCGCTTTGTATGGCAAGTTTAAAGTAGAAGAGGCATCAAATGCGCTCCAAGCTGGCCTTCTTTGCACACAATCTTCTGTTTCTCTTAGACCACCCATGTCTGAAGTAGTTCAGATGCTAACCAAGAACGACTACGTTATTCCCACCCCAAAACAACAACCATTCCTCAAATCTATTGTGCCAAATCTAGATGACCCCAACCTAACTTCCACAATGAGCATTGTATCCTCAAATGGGCAAGCAAGTGCAAGGTCCTCTTTCCACAGTACCACCAGTTCCCTAACACCAATTGAGGATTTAACAGTACTAGAGAATTACGTTTCTTCTTCACCCAGGTTCACCTTTACGGCGAGCCCTGACTCAAATATCCAAGTAAATATTGGCGCACCTGAACCTAGGTAG 2046 0.4438 MITRLILISSLLLVLFSRAASSDAGVHEAGLTCGSFQYPGEDSAKLSQDFMALMDALSFQVKEHGWGAQTLLGSGNPMYALGQCHRDLNLTQCYTCFGQSRQLLSRCMPKTAGRIYLDGCFLRYDNYSFFRESLDPSHDINVCESRNPLGNDGDKRVASVILNVTQAASERKFAVDEGEGVFALAQCWETLDKWNCERCLREAGRKLQECVPAAEGRSLFTGCFFRYSTRKFYHDVTVSVIDTKNSAGRPKRRHSVWLIVACVVLAIVAVLLIILAAFLCWRRKALYRKVSDLGGASPGFAYIAGFSFRYDLLEKATNYFDPANKLGQGGSGSVFKGTLPSGSIVAVKRLFFNTRHWTDGLFNELNLINGIQHKNVVKLLGCSIEGPESLLVYEFVPNRSLNQVLFGKDSVNALPWERRFQIICGIAEGLAYLHGGSGTKIIHRDIKSSNILLDDNLNPKIADFGLARCVAETKSHLSTGNTGTLEYLAPEYLVKGQMTEKSDIYAFGVLVVEIVCGKKNSVYKPGSTSILHSVWKNYKGNNITASVDPALYGKFKVEEASNALQAGLLCTQSSVSLRPPMSEVVQMLTKNDYVIPTPKQQPFLKSIVPNLDDPNLTSTMSIVSSNGQASARSSFHSTTSSLTPIEDLTVLENYVSSSPRFTFTASPDSNIQVNIGAPEPR* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3119 681 CDD STKc_IRAK 326 590 - -
Apr9g3119 681 Gene3D Phosphorylase Kinase; domain 1 301 395 - -
Apr9g3119 681 Pfam Protein kinase domain 323 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g3119 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Apr9g3119 681 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Apr9g3119 681 SUPERFAMILY Protein kinase-like (PK-like) 306 620 IPR011009 -
Apr9g3119 681 SMART serkin_6 320 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g3119 681 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 7 676 - -
Apr9g3119 681 ProSiteProfiles Gnk2-homologous domain profile. 28 129 IPR002902 -
Apr9g3119 681 Pfam Salt stress response/antifungal 47 127 IPR002902 -
Apr9g3119 681 Pfam Salt stress response/antifungal 157 229 IPR002902 -
Apr9g3119 681 ProSiteProfiles Gnk2-homologous domain profile. 135 232 IPR002902 -
Apr9g3119 681 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 7 676 - -
Apr9g3119 681 ProSiteProfiles Protein kinase domain profile. 320 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g3119 681 Gene3D - 148 232 IPR038408 -
Apr9g3119 681 Gene3D - 32 129 IPR038408 -
Apr9g3119 681 Gene3D Transferase(Phosphotransferase) domain 1 396 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3119 Apr-Chr9 38002520 38006101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3119 6 613 Receptor kinase-like Gene Family AT1G70520 40.989 1.86e-149 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr9g3119 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3119 - - gmx:100780384 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3119 9 38002520 38006101 Apr9g3119 9 38002520 38006101 ECH