Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3118 ATGGAGGACCTGCACGGTTTCCACTTCACCGCCGGTTACTCCGAGCAGTCGCAGTCATCTGTACCGGTTCCTCCATTAACACCGACCGGTGAAAACGTTATTTCACCGGTTTGGATTCCAGTTCCTGAACCGCCGCAATTGAACCGGTCTTGTTCTTCATCATTGGATGCAGTGTCGTCCGAGGTCGGCAGGGTCGAGGAAGACGAGGTTTCGAAAACATTTCGCGCCAAAATTGCTTCTCATCCTCTCTTTCCTAATCTCCTCGATGCATATATAAATTGCCAGAAGGTGGGAGCGTCGGAGGATATGGTGAAATTGTTGGATGAAATCGGAGGAGAGAACAGCGCTGGCGGTGTTAGTCAGACTTCATCAGCGTTATGGGGTGCTGATCCCGAGCTCGATGATTTCATGGAAACATATTGCAGTTTACTGGTGAAGTACCAATCCGACCTCTCGAGGCCCTTTGACGAGGCAATCGATTTTCTAAACGACATGGAAACTCAGCTTAACTCCATCTGCAACGATTCTGCTCTCGAAAACGTTACTGACGAGACTAATGGATCATCTGAAGAGGACTTCAGTAGGGAAGAAAAAGAGGCAACTGAGTGCAAGAAGATAACTGAAGATCGACAGCTAAAGGATAAGCTTCTGCGTAGATATAGCGGCTATATTAGCAGGCTGAAGCATGAATTTTCCAAAAGGAAGAAGAAAGAAAAGATACCGAAAGAAGCAAGGCAAATCTTAATTTCATGGTGGAATATCCACTTTAATTGGCCATATCCAACGGAAACGGATAAGATTGCGCTGGCTGAATGGACTGGTCTTGATCAGAAGCAGATAAACAATTGGTTCATAAACCAAAGGAAGCGTCACTGGAAAGCAGGTCTCCATGGACGCCCCTGCATGAATGACTGA 915 0.4656 MEDLHGFHFTAGYSEQSQSSVPVPPLTPTGENVISPVWIPVPEPPQLNRSCSSSLDAVSSEVGRVEEDEVSKTFRAKIASHPLFPNLLDAYINCQKVGASEDMVKLLDEIGGENSAGGVSQTSSALWGADPELDDFMETYCSLLVKYQSDLSRPFDEAIDFLNDMETQLNSICNDSALENVTDETNGSSEEDFSREEKEATECKKITEDRQLKDKLLRRYSGYISRLKHEFSKRKKKEKIPKEARQILISWWNIHFNWPYPTETDKIALAEWTGLDQKQINNWFINQRKRHWKAGLHGRPCMND* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3118 304 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 18 295 - -
Apr9g3118 304 SMART ELK_2 211 232 IPR005539 GO:0003677
Apr9g3118 304 SMART KNOX2_2 123 174 IPR005541 GO:0003677|GO:0005634
Apr9g3118 304 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 18 295 - -
Apr9g3118 304 SUPERFAMILY Homeodomain-like 232 296 IPR009057 -
Apr9g3118 304 Pfam KNOX1 domain 74 114 IPR005540 GO:0003677|GO:0005634
Apr9g3118 304 Pfam KNOX2 domain 128 173 IPR005541 GO:0003677|GO:0005634
Apr9g3118 304 Gene3D - 228 298 - -
Apr9g3118 304 Pfam Homeobox KN domain 251 290 IPR008422 GO:0003677|GO:0006355
Apr9g3118 304 SMART HOX_1 233 298 IPR001356 GO:0003677
Apr9g3118 304 ProSiteProfiles ELK domain profile. 211 231 IPR005539 GO:0003677
Apr9g3118 304 ProSitePatterns 'Homeobox' domain signature. 269 292 IPR017970 GO:0000981|GO:0006355
Apr9g3118 304 Pfam ELK domain 212 232 IPR005539 GO:0003677
Apr9g3118 304 ProSiteProfiles 'Homeobox' domain profile. 231 294 IPR001356 GO:0003677
Apr9g3118 304 SMART KNOX1_2 72 116 IPR005540 GO:0003677|GO:0005634
Apr9g3118 304 CDD homeodomain 243 293 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3118 Apr-Chr9 37993042 37999227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3118 1 293 Homeobox Transcription Factor Family AT1G23380 47.078 1.95e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr9g3118 KNOX2 2.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3118 - - aprc:113874840 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0797 1 9858819 9868259 Apr9g3118 9 37993042 37999227 ECH
Apr9g3118 9 37993042 37999227 Apr9g3118 9 37993042 37999227 ECH