Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3094 ATGGTGATCTTCAAGAAGAGAGTTATTGTGGCAATTAATTGGAAACGGTACCATTCTTGTACTCACCCGTTGCACATATGGATCGTGGTTGACTACACTACTGTGTTTGTTTTCCGGCTCTTAATGTTTGTTGATAATGGGCTAGCTGCGGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGATTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACAATAATTGGTACCCTGTGGTTCAGCAGTGCCAAGAATTGTTTGCCTGAAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTTAGCTACTGTGGACTCCTCTGCATTGCTTGCATGTCCTTGGGGAAGTGGTTGACACGAAGACAAGCACACTTATTGCGTGCTCAACAGGGTATCCCTGTATCCGAATATGGAGTTCTGGTTGATATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAAGAAACAAGGGGCATGGGCCAAGACGCTGCTGCATATCATCCAGGACTTTATCTAACTCCAGCTCAGAGAGAAGCCGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCCACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCCACGTAGGGAATGAGGTCCGTGGCCTGCCTTGTGCTCATAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGTTGCTCGGTATTTCCAAACCTTGATCTTAGTGCTCTGTCCAATCTCCGTGCTGAGCCCGAAAGATCTTCTGCCAGTGTTGTGACAACAACCAGATATGTGAGAGGCCAACCATCTAGTCAAAGTTACCGGTTAAGATTACAGGGTCTTCTCCGTCCAGTCCGGTCTGAAATTTCAGGGCCAGTTGGCGACACTGATAATGCTCTGGAAAATGCTGAGAACGGTGCTGTACCAATTTTGACTCAAAATGCATCATATGGAGGCCATGACTTGTCTGTCGAACGCATGCCTGTTAGTCTTTCCTCTGCGCAAAGTTAG 1095 0.4658 MVIFKKRVIVAINWKRYHSCTHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFSSAKNCLPEEGQKWGFLIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRAEPERSSASVVTTTRYVRGQPSSQSYRLRLQGLLRPVRSEISGPVGDTDNALENAENGAVPILTQNASYGGHDLSVERMPVSLSSAQS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3094 364 Pfam Ring finger domain 218 260 IPR001841 -
Apr9g3094 364 SUPERFAMILY RING/U-box 201 268 - -
Apr9g3094 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 8 343 - -
Apr9g3094 364 ProSiteProfiles Zinc finger RING-type profile. 219 260 IPR001841 -
Apr9g3094 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 265 IPR013083 -
Apr9g3094 364 SMART ring_2 219 259 IPR001841 -
Apr9g3094 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 8 343 IPR044793 GO:0004842|GO:0010182
Apr9g3094 364 CDD RING-H2_RNF111_like 218 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3094 Apr-Chr9 37751085 37760885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3094 42 344 C3H Transcription Factor Family AT3G47990 74.837 4.22e-164 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3094 K16284 - gmx:100812016 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3094 9 37751085 37760885 Apr9g3094 9 37751085 37760885 ECH
Apr9g3094 9 37751085 37760885 Apr1g0824 1 10531289 10537735 PCT