Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3090 ATGAAAAACTCAAACATTACTACTAGTGATTCATCAAAACTTGATCGCAAAACCATCGAAAGAAACCGAAGAATTCACATGAAAGCTCTCTGCTTCAAGCTTGTTTCTATTATTCCTTCCAAATACCTCAAACCCACCAAGGACATGTTGTCACAACAAGATCAGCTGGATCTAGCAGCCACGTACATAAAGCATCTGAGAGAAAAGGTAGAAAAATTAAAAGGAAAGAAGGAGCAAGCCATGAACATGATTAGGTCAACCCAAAGCAATAATAGAATTTTTAATATTGGCTCACAATTGCCTCAACTTGAGATAAGGGACTTGGGTTCGGGGATTGAAGTGATGTTGATAAGTGGGTTGAACAAGAACTTCATGCTCTACGAAGTAATTAGTGTCCTTGAAGAAGAAGGTGCTGAAGTTGTGACTGCTAACTTCTCTACCGTTGCTGATAAGATTTTTTACACTGTTCATGCTCAGGTTAAAATATCAAGAGTTGGTGTTGAGCCAACGAGGGTATATCAAAGGCTTCAGGAGTTGATCGCACCCCTAGAAAGCTGGGAGTACATATCGTGA 573 0.3962 MKNSNITTSDSSKLDRKTIERNRRIHMKALCFKLVSIIPSKYLKPTKDMLSQQDQLDLAATYIKHLREKVEKLKGKKEQAMNMIRSTQSNNRIFNIGSQLPQLEIRDLGSGIEVMLISGLNKNFMLYEVISVLEEEGAEVVTANFSTVADKIFYTVHAQVKISRVGVEPTRVYQRLQELIAPLESWEYIS* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3090 190 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
Apr9g3090 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 79 IPR036638 GO:0046983
Apr9g3090 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 66 IPR011598 GO:0046983
Apr9g3090 190 PANTHER TRANSCRIPTION FACTOR BHLH162 9 180 - -
Apr9g3090 190 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 180 IPR015660 GO:0003700|GO:0006357
Apr9g3090 190 Coils Coil 63 90 - -
Apr9g3090 190 Gene3D - 2 96 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3090 Apr-Chr9 37708093 37709827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3090 1 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.715 1.06e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr9g3090 HLH 6.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3090 - - vun:114179389 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0826 1 10627323 10628193 Apr9g3090 9 37708093 37709827 ECH
Apr9g3090 9 37708093 37709827 Apr9g3090 9 37708093 37709827 ECH
Apr9g3090 9 37708093 37709827 Apr1g0826 1 10627323 10628193 PCT