Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3087 ATGACTCACACTTCCGTTCAAAGGGATCGCCGCATCCTATCATTCCCGGCGGTTCACCCTTGCCAAACCATATCCCCCAACACCCTCCTCGCTTCTCTAATCACTCTCTCCAACAACATAACCAATTACCAATCCCAATTCTTCCCCACCCAACGACGAAACGCACGAGAAACAATACGCCAAATCTCCATTCTTTCCATATTCCTCCACGAATTCCGAGAACGTGGATTGTTTATCCCTCACTCCACCATCCTCTGTTTCTCAGAGCTCCACTTCACTTTACAAAAGATTCACTTCTTACTACAAGATTCTTCTCTCCAAGGCGTTCGCCTCTTGATGCTCGCCAAAGCACAACACGTGGCATCGCAGTTCCGCGCTCTCGTTCGCGCTATGGCCACCGCTCTCGACGTTTTACCTATTCATGAATTCCAGGTTTGCCACGAGGTCAAGGAGTTAGTGGAGTTAGTAACCAAGCAAGCCAGGAAAGCAAAATTCGAACTGGACCCCAACGACGCGCGTGCAAGTGAAACGCTTCACTCGGTTCTGCGTCAGTTCGCGAGGGGAACCGAACCGGACCAGACTGCCATGCAGGGAATCCTCGACTACCTCGAAATCAAAAGCTGGACGGATTGTAACAAAGAGATCAAATTCTTAGAAGAAGAGATTGGCTTAGAGTGCGAAGAATGCGAGGAGCGAGGGGTTCCATTTTTTAGTAGCTTGGTAGGGTTCTTAAGTTACTGCAGAGGAGTCATATTCGAAACTATACTACACAGTGACACTAACCAATCCGAATCCGAAGCCAGGTTCAGCACGGAGATGATAACGCTAACGTCCGTTAACCCGGAGGATTTCCGGTGCCCGATTTCCCTCGAGTTGATGATGGACCCGGTAACGGTGTCAACGGGACAAACCTACGACCGAGCCTCCATTCGCAAATGGCTGAAAGCAGGGAACACCAAGTGTCCTAAAACAGGGGAGAATCTAAAAAACACTGAGTTAGTCCCCAACACAACGCTCAAGAGGCTCATCCAACACTTCTGCGCCGACAATGGCATTTCCCTTGCCAAGTCGTTTAACCGTAGCCGTGACATAACGAGAACCATCGTCGCCGGAAGTCCCGCGGCGGCGCACGCCGTGCAATTCCTCTCGTGGTTTCTCACACGGAGGCTCGTGTTCGGAACACAAGAACAGAAACACAGAGCTGCGTACGAGATTCGTGTGCTTGCCAGGTCGAGCATTTTCAACAGAGCGTGTTTGATTGAAGTTGGGACGGTGCCTCCTCTGCTGGAGCTTTTGGCCTCTGAGGATAAATCCACGCAAGAGAACGCGATTTCTGCGCTGTTGAAGCTCGCAAAGCATGCAAATGGCCCCGAGAATATCATGAACAGCGGAGGGCTAAAGCCTGTTCTCTCTGTGCTGAAGAAAGGGCTTAGCCTTGAAGTTCGCCAAACCGCGGCTGCTACGATATTTTATCTTTCTTCGGTGAAAGAGTACAGGAAAACAATTGGTGAGAACCCAGAAGTGATTCCGGCTTTGGTAGAGTTGGTGAAGGAAGGAACAACCTGCGGGAAGAAGAACGCTGTTGTTGCAATTTGTGGGTTACTTTTGCTTCCTAAGAATCACCAAAGGGCGCTGGAAGCGGGTGCTGTTCCTGCATTAGTTGGTGTTTTGGGTTCTTCTAACAAGGATGAGCTTGTGACGGAGGCTTTGGCTGTTCTCGCGGCTCTGGCGGAGAATGTGGATGGAGCACGTGCCATATTACAAGCCTCGGCTTTGCGGTTGATTACTGGGATGTTGCGATCTGCCACGTCACGTGCAGGGAAAGAACACTCTGCATCGATTTTGCTATCGCTGTGTGTGAATGTTGGTGGTGAGGTGGTGGGTGTTCTTGCTAAGGACCCCTCCCTCATGCCTTTGCTTTATTCGCTTCTCACTGATGGCACTTCTCATGCAGCCAAGAAAGCCCGCTTCCTCATTAAAGTTTTACACGATTTTAACGAAACTAGAACTTCCCGATTCAAGGATTCTTCGCCTCCTCAAGAACGATCCCTTCACGTTTGGTGA 2064 0.501 MTHTSVQRDRRILSFPAVHPCQTISPNTLLASLITLSNNITNYQSQFFPTQRRNARETIRQISILSIFLHEFRERGLFIPHSTILCFSELHFTLQKIHFLLQDSSLQGVRLLMLAKAQHVASQFRALVRAMATALDVLPIHEFQVCHEVKELVELVTKQARKAKFELDPNDARASETLHSVLRQFARGTEPDQTAMQGILDYLEIKSWTDCNKEIKFLEEEIGLECEECEERGVPFFSSLVGFLSYCRGVIFETILHSDTNQSESEARFSTEMITLTSVNPEDFRCPISLELMMDPVTVSTGQTYDRASIRKWLKAGNTKCPKTGENLKNTELVPNTTLKRLIQHFCADNGISLAKSFNRSRDITRTIVAGSPAAAHAVQFLSWFLTRRLVFGTQEQKHRAAYEIRVLARSSIFNRACLIEVGTVPPLLELLASEDKSTQENAISALLKLAKHANGPENIMNSGGLKPVLSVLKKGLSLEVRQTAAATIFYLSSVKEYRKTIGENPEVIPALVELVKEGTTCGKKNAVVAICGLLLLPKNHQRALEAGAVPALVGVLGSSNKDELVTEALAVLAALAENVDGARAILQASALRLITGMLRSATSRAGKEHSASILLSLCVNVGGEVVGVLAKDPSLMPLLYSLLTDGTSHAAKKARFLIKVLHDFNETRTSRFKDSSPPQERSLHVW* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3087 687 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Apr9g3087 687 SUPERFAMILY RING/U-box 281 353 - -
Apr9g3087 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 591 IPR000225 GO:0005515
Apr9g3087 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Apr9g3087 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Apr9g3087 687 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Apr9g3087 687 Gene3D - 354 671 IPR011989 -
Apr9g3087 687 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Apr9g3087 687 PANTHER OS07G0532750 PROTEIN 7 672 - -
Apr9g3087 687 CDD RING-Ubox_PUB 284 326 IPR045210 -
Apr9g3087 687 Pfam Armadillo/beta-catenin-like repeat 415 451 IPR000225 GO:0005515
Apr9g3087 687 SUPERFAMILY ARM repeat 393 662 IPR016024 -
Apr9g3087 687 SMART arm_5 453 494 IPR000225 GO:0005515
Apr9g3087 687 SMART arm_5 411 452 IPR000225 GO:0005515
Apr9g3087 687 SMART arm_5 537 578 IPR000225 GO:0005515
Apr9g3087 687 PANTHER U BOX DOMAIN-CONTAINING 7 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3087 Apr-Chr9 37664636 37668043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3087 1 687 U-box Gene Family AT1G10560 39.205 3.36e-163 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3087 - - gmx:100787869 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0831 1 10779516 10783420 Apr9g3087 9 37664636 37668043 ECH
Apr9g3087 9 37664636 37668043 Apr9g3087 9 37664636 37668043 ECH